RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 NEURL3Q96EH8 262 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 MRPL48Q96GC5 212 aaKnown RBP3.89□□□□□ -1.79
PCF11-202ENST00000528336 KCNS1Q96KK3 526 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 OR7D2Q96RA2 312 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 TBL1YQ9BQ87 522 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 PARP12Q9H0J9 701 aaKnown RBP3.89□□□□□ -1.79
PCF11-202ENST00000528336 SLCO1B3Q9NPD5 702 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 TMEM216Q9P0N5 145 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 HDGFL3Q9Y3E1 203 aa3.89□□□□□ -1.79
PCF11-202ENST00000528336 FRYLO94915 3013 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 PLXND1Q9Y4D7 1925 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 A0A087WX48 190 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 IGHV2-26A0A0B4J1V2 119 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 GMNCA6NCL1 334 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 K7EPK0 472 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 GYG2O15488 501 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 TCF21O43680 179 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 HTR1AP08908 422 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 SPI1P17947 270 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 CCL1P22362 96 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 GFERP55789 205 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 CTBP2P56545 445 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 UBE2NP61088 152 aaKnown RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 TBPL1P62380 186 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 REG3AQ06141 175 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 ERCC8Q13216 396 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 JOSD1Q15040 202 aaPredicted RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 GUCA2BQ16661 112 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 PLPPR5Q32ZL2 321 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 LINC00303Q3SY05 128 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 LRRC10Q5BKY1 277 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 TMPPEQ6ZT21 453 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 DEFB119Q8N690 84 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 APOBEC3DQ96AK3 386 aaPredicted RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 SLC35E1Q96K37 410 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 ZNF285Q96NJ3 590 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 SMIM14Q96QK8 99 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 KLF6Q99612 283 aaPredicted RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 TMEM243Q9BU79 118 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 RSPO3Q9BXY4 272 aaPredicted RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 SLC25A22Q9H936 323 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 MED29Q9NX70 200 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 SPANXCQ9NY87 97 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 KLF13Q9Y2Y9 288 aaPredicted RBP3.88□□□□□ -1.79
PCF11-202ENST00000528336 NEUROG3Q9Y4Z2 214 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 NUMA1Q14980 2115 aa3.88□□□□□ -1.79
PCF11-202ENST00000528336 ZNF292O60281 2723 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 MYO15AQ9UKN7 3530 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 SDK1Q7Z5N4 2213 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 SHROOM3Q8TF72 1996 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 FANCMQ8IYD8 2048 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 FAM186AA6NE01 2351 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 TRAPPC13A5PLN9 417 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 ZNF850A8MQ14 1090 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 ATP6V1G2-DDX39BF2Z307 99 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 INMT-MINDY4F8WBC2 141 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 TMX2-CTNND1H3BSU7 103 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 ISLRO14498 428 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 HMGB3O15347 200 aaKnown RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 PFDN1O60925 122 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 CDRT1O95170 752 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 GADD45GO95257 159 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 ZNF806P0C7X5 589 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 PIRTP0C851 137 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 COX7A1P24310 79 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 GADD45AP24522 165 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 S100PP25815 95 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 PHBP35232 272 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 GLRXP35754 106 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 SPINT3P49223 89 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 ZNF140P52738 457 aaPredicted RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 DNAJB13P59910 316 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 CKS1BP61024 79 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 RPS28P62857 69 aaKnown RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 TMEM267Q0VDI3 215 aaPredicted RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 ARL9Q6T311 187 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 PLET1Q6UQ28 207 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 C3orf62Q6ZUJ4 267 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 LY6G5BQ8NDX9 201 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 OR8B12Q8NGG6 310 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 OR4D11Q8NGI4 311 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 OR4K15Q8NH41 348 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 OR51H1Q8NH63 302 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 GNPDA2Q8TDQ7 276 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 DCAKDQ8WVC6 231 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 KLK6Q92876 244 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 TMEM159Q96B96 161 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 FXYD5Q96DB9 178 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 FOPNLQ96NB1 174 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 HSPB9Q9BQS6 159 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 EFCAB11Q9BUY7 163 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 POLR2J2Q9GZM3 115 aaKnown RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 POLR2J3Q9H1A7 115 aaKnown RBP3.87□□□□□ -1.79
PCF11-202ENST00000528336 ACER3Q9NUN7 267 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 UQCC1Q9NVA1 299 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 PRO0461Q9UI25 63 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 WASHC3Q9Y3C0 194 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 INSIG2Q9Y5U4 225 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 HEBP2Q9Y5Z4 205 aa3.87□□□□□ -1.79
PCF11-202ENST00000528336 PTPRZ1P23471 2315 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms