RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RPL18Q07020 188 aaKnown RBP1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 NDUFA5Q16718 116 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 IMPG1Q17R60 797 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 Q6ZS49 121 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 TMEM86BQ8N661 226 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 MBD3L1Q8WWY6 194 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 IMP4Q96G21 291 aaKnown RBP1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 OR52E6Q96RD3 313 aa1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 PARD6GQ9BYG4 376 aaPredicted RBP1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 WDR61Q9GZS3 305 aaKnown RBP1.37□□□□□ -2.19
HMGB1P28-201ENST00000507778 TGIF2-C20orf24A0A0A6YYL0 155 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 TRBV10-2A0A0K0K1G8 114 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 PSMD12O00232 456 aaPredicted RBP1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 CRPP02741 224 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 PRM2P04554 102 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 IFNA16P05015 189 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 CD79AP11912 226 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 NFYAP23511 347 aaPredicted RBP1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 SULT1A1P50225 295 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 CCL20P78556 96 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 ELOBQ15370 118 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 NNATQ16517 81 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 MOGQ16653 247 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 ARHGAP11BQ3KRB8 267 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 KLK6Q92876 244 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 CISHQ9NSE2 258 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 CMTM6Q9NX76 183 aa1.36□□□□□ -2.19
HMGB1P28-201ENST00000507778 DOCK10Q96BY6 2186 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 TRBV6-5A0A0K0K1A5 114 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 FABP5P3A8MUU1 101 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 PSME3P61289 254 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 IBA57Q5T440 356 aaKnown RBP1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 SYPL2Q5VXT5 272 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 FAM173BQ6P4H8 233 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 Q6ZSA8 131 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 FP248Q71RG6 208 aaPredicted RBP1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 MRPL30Q8TCC3 161 aaKnown RBP1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 Q96M85 177 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 COL4A1P02462 1669 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 MUC6Q6W4X9 2439 aa1.35□□□□□ -2.19
HMGB1P28-201ENST00000507778 NCKAP5O14513 1909 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 OTOGLQ3ZCN5 2332 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 RPS4Y1P22090 263 aaKnown RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BOP23527 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BBP33778 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 EIF2B2P49770 351 aaKnown RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 CEBPGP53567 150 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 FXYD2P54710 66 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BDP58876 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BCP62807 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 SUPT4H1P63272 117 aaKnown RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST2H2BEQ16778 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 AADACL3Q5VUY0 350 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 RPS19BP1Q86WX3 136 aaKnown RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 C20orf196Q8IYI0 205 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 LRRC25Q8N386 305 aaPredicted RBP1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 OR8J2Q8NGG1 315 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 OR8B3Q8NGG8 313 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 MCFD2Q8NI22 146 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BHQ93079 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 CCDC42Q96M95 316 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BNQ99877 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 HIST1H2BMQ99879 126 aa1.34□□□□□ -2.19
HMGB1P28-201ENST00000507778 SCN9AQ15858 1988 aa1.34□□□□□ -2.2
HMGB1P28-201ENST00000507778 KIF24Q5T7B8 1368 aa1.34□□□□□ -2.2
HMGB1P28-201ENST00000507778 MDC1Q14676 2089 aaKnown RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 TRAPPC13A5PLN9 417 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 SDCBPO00560 298 aaPredicted RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 CHP2O43745 196 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 HLA-DRB1P01911 266 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPSAP08865 295 aaKnown RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 HIST1H1TP22492 207 aaPredicted RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 SNRPD2P62316 118 aaKnown RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 ITGB3BPQ13352 177 aaPredicted RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 Q1T7F1 81 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 DCXRQ7Z4W1 244 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 DHFR2Q86XF0 187 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 COMMD5Q9GZQ3 224 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 PRTFDC1Q9NRG1 225 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 VPS29Q9UBQ0 182 aa1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 NYNRINQ9P2P1 1898 aaKnown RBP1.33□□□□□ -2.2
HMGB1P28-201ENST00000507778 SIPA1L1O43166 1804 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 CLDN24A6NM45 220 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 IBA57-AS1B1ANH7 110 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 METTL15P1P0C7V9 234 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 OMPP47874 163 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 ZNF80P51504 273 aaPredicted RBP1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 HBA1P69905 142 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 ACOT6Q3I5F7 207 aaPredicted RBP1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPL22L1Q6P5R6 122 aaKnown RBP1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 TRAPPC5Q8IUR0 188 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 CLDN22Q8N7P3 220 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 C9orf163Q8N9P6 203 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 MNS1Q8NEH6 495 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 OR13C4Q8NGS5 318 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 RASSF5Q8WWW0 418 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 C11orf40Q8WZ69 217 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 DERL1Q9BUN8 251 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 CYSTM1Q9H1C7 97 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms