RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 IFNA17P01571 189 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 HLA-DRB1P01911 266 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 IAPPP10997 89 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 RPL12P30050 165 aaKnown RBP10.06□□□□□ -0.8
VPS52-220ENST00000493674 S100A11P31949 105 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 RPL23AP62750 156 aaKnown RBP10.06□□□□□ -0.8
VPS52-220ENST00000493674 VAMP2P63027 116 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 DEFB112Q30KQ8 113 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 C10orf55Q5SWW7 151 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 TMEM252Q8N6L7 170 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 ZNF48Q96MX3 618 aaPredicted RBP10.06□□□□□ -0.8
VPS52-220ENST00000493674 RBM14Q96PK6 669 aaKnown RBP10.06□□□□□ -0.8
VPS52-220ENST00000493674 OR4C12Q96R67 309 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 COMMD5Q9GZQ3 224 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 C1RLQ9NZP8 487 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 KIAA1456Q9P272 454 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 FN1P02751 2386 aaKnown RBP10.06□□□□□ -0.8
VPS52-220ENST00000493674 MDFIC2A0A1B0GVS7 189 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 FAM24AA6NFZ4 105 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 PMS2P5A8MQ11 134 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 FCN1O00602 326 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 FGF16O43320 207 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 BCL2L11O43521 198 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 LY6G6DO95868 133 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 EWSR1Q01844 656 aaKnown RBP eCLIP10.05□□□□□ -0.8
VPS52-220ENST00000493674 BAXQ07812 192 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 SPINK9Q5DT21 86 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 HAPLN4Q86UW8 402 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 TMEM170AQ8WVE7 144 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 PSENENQ9NZ42 101 aa10.05□□□□□ -0.8
VPS52-220ENST00000493674 IGLC7A0M8Q6 106 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 C15orf62A8K5M9 175 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 TEX22C9J3V5 150 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 H3BUX3 64 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 CA2P00918 260 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 AMY1AP04745 511 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 NUP62P37198 522 aaPredicted RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 IER3P46695 156 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 RPL27AP46776 148 aaKnown RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 HOXA1P49639 335 aaPredicted RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 RIPPLY3P57055 190 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 OPCMLQ14982 345 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 TNXAQ16473 311 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 PVRIGQ6DKI7 326 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 Q6YL49 198 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 C16orf82Q7Z2V1 217 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 C5orf56Q8N8D9 126 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 SRSF12Q8WXF0 261 aaKnown RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 BSCL2Q96G97 398 aaPredicted RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 SRSF8Q9BRL6 282 aaKnown RBP10.04□□□□□ -0.8
VPS52-220ENST00000493674 SLC25A33Q9BSK2 321 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 SLC25A31Q9H0C2 315 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 ARL6Q9H0F7 186 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 PLEKHA3Q9HB20 300 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 CYTL1Q9NRR1 136 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 MOB4Q9Y3A3 225 aa10.04□□□□□ -0.8
VPS52-220ENST00000493674 A0A1W2PN81 502 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 PRSS46E5RG02 174 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 H3BP45 60 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 C4BPBP20851 252 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 CHRNA7P36544 502 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 SULT1A1P50225 295 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 CAV2P51636 162 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 ATP5IP56385 69 aaPredicted RBP10.03□□□□□ -0.8
VPS52-220ENST00000493674 NDPQ00604 133 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 WT1-ASQ06250 92 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 ZNF562Q6V9R5 426 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 ZNF114Q8NC26 417 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 OR10W1Q8NGF6 305 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 OR5R1Q8NH85 324 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 SMR3AQ99954 134 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 GSX1Q9H4S2 264 aaPredicted RBP10.03□□□□□ -0.8
VPS52-220ENST00000493674 HEYLQ9NQ87 328 aaPredicted RBP10.03□□□□□ -0.8
VPS52-220ENST00000493674 FBXL17Q9UF56 701 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 STRAPQ9Y3F4 350 aaKnown RBP10.03□□□□□ -0.8
VPS52-220ENST00000493674 U3KQ87 197 aa10.03□□□□□ -0.8
VPS52-220ENST00000493674 IGHV7-81A0A0B4J1V7 117 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 NCBP2LA6PVI3 153 aaKnown RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 TAAR5O14804 337 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 SCAF4O95104 1147 aaKnown RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 IGHV4-59P01825 116 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 OPN1MWP04001 364 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 OPN1MW2P0DN77 364 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 OPN1MW3P0DN78 364 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 RNASE2P10153 161 aaKnown RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 AP2S1P53680 142 aaPredicted RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 NHLH2Q02577 135 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 ARL16Q0P5N6 197 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 TMEM267Q0VDI3 215 aaPredicted RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 PLGLAQ15195 96 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 SPANXN5Q5MJ07 72 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 HSD17B13Q7Z5P4 300 aaPredicted RBP10.02□□□□□ -0.81
VPS52-220ENST00000493674 TMEM219Q86XT9 240 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 STX12Q86Y82 276 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 SLC24A4Q8NFF2 622 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 CLCC1Q96S66 551 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 ARPC5LQ9BPX5 153 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 HIPK2Q9H2X6 1198 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 YAE1D1Q9NRH1 226 aa10.02□□□□□ -0.81
VPS52-220ENST00000493674 PITPNC1Q9UKF7 332 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms