RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RRHO14718 337 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 ATP5G3P48201 142 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 PAFAH1B2P68402 229 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 DMRTA2Q96SC8 542 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 TMUB1Q9BVT8 246 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 RFNGQ9Y644 331 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 F2RL2O00254 374 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 SNRPCP09234 159 aaKnown RBP12.16□□□□□ -0.46
HDAC6-220ENST00000477528 MFAP2P55001 183 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 RPL23P62829 140 aaKnown RBP12.16□□□□□ -0.46
HDAC6-220ENST00000477528 OR51G1Q8NGK1 321 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 LINC01560Q8TB33 94 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 REG1AP05451 166 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 LIPFP07098 398 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 TDGF1P13385 188 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 IL15RAQ13261 267 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 Q6ZRM9 215 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 CACNG8Q8WXS5 425 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 PGPA6NDG6 321 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 C10orf142B7Z368 130 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 TMEM144Q7Z5S9 345 aa12.16□□□□□ -0.46
HDAC6-220ENST00000477528 GCGP01275 180 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 SAA1P0DJI8 122 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-220ENST00000477528 CCL3L1P16619 93 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 OR4A5Q8NH83 315 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 Q8NFD4 153 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 DOCK7Q96N67 2140 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 CGAP01215 116 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 SLC35B1P78383 322 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 KLRB1Q12918 225 aa12.15□□□□□ -0.46
HDAC6-220ENST00000477528 A8MWL6 223 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 M0R2Z0 102 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 RPL29P47914 159 aaKnown RBP12.14□□□□□ -0.47
HDAC6-220ENST00000477528 HNRNPA3P51991 378 aaKnown RBP12.14□□□□□ -0.47
HDAC6-220ENST00000477528 ELOBQ15370 118 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 ZNF585BQ52M93 769 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 OR2D3Q8NGH3 330 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 MRPL18Q9H0U6 180 aaKnown RBP12.14□□□□□ -0.47
HDAC6-220ENST00000477528 HLA-DQA1P01909 254 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 ARF6P62330 175 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 RIGQ13278 110 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 CENPWQ5EE01 88 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 Q6ZS92 163 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 CRIM1Q9NZV1 1036 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 ANOS1P23352 680 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 LMO1P25800 156 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 HEPN1Q6WQI6 88 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 PNKDQ8N490 385 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 RPUSD1Q9UJJ7 312 aaKnown RBP12.14□□□□□ -0.47
HDAC6-220ENST00000477528 GOSR1O95249 250 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 FAM87AP0C7U9 286 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 SELLP14151 372 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 HOXA5P20719 270 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 KRTAP27-1Q3LI81 207 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 DTX1Q86Y01 620 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 TMEM183AQ8IXX5 376 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 PRSS3P2Q8NHM4 247 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 KIAA2026Q5HYC2 2103 aa12.14□□□□□ -0.47
HDAC6-220ENST00000477528 SCO2A0A1W2PP80 73 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 IGHV3-48P01763 117 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 RNASEH2CQ8TDP1 164 aaKnown RBP12.13□□□□□ -0.47
HDAC6-220ENST00000477528 LINC00473A8K010 186 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 ERVK11-1P61568 191 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 SSX7Q7RTT5 188 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 BPIFA4PQ86YQ2 179 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 RPP25LQ8N5L8 163 aaKnown RBP12.13□□□□□ -0.47
HDAC6-220ENST00000477528 IGKV1D-17A0A075B6S4 117 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 PRCDQ00LT1 54 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 GAMTQ14353 236 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 PCDH15Q96QU1 1955 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 FXYD3Q14802 87 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 ZCCHC24Q8N2G6 241 aaKnown RBP12.13□□□□□ -0.47
HDAC6-220ENST00000477528 GBGT1Q8N5D6 347 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 PARD6GQ9BYG4 376 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-220ENST00000477528 TMEM242Q9NWH2 141 aa12.13□□□□□ -0.47
HDAC6-220ENST00000477528 ACACAQ13085 2346 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 GPX4P36969 197 aaPredicted RBP12.12□□□□□ -0.47
HDAC6-220ENST00000477528 MIR17HGQ75NE6 70 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 PRNTQ86SH4 94 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 WDR86Q86TI4 376 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 LOC105371242A0A075B767 164 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 TRBV9A0A0B4J1U6 114 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 ZNF474Q6S9Z5 364 aaPredicted RBP12.12□□□□□ -0.47
HDAC6-220ENST00000477528 TREML4Q6UXN2 200 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 GRAMD2BQ96HH9 432 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 DMRT1Q9Y5R6 373 aa12.12□□□□□ -0.47
HDAC6-220ENST00000477528 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.12□□□□□ -0.47
HDAC6-220ENST00000477528 LINC00305Q7Z4B0 112 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 RBM14Q96PK6 669 aaKnown RBP12.11□□□□□ -0.47
HDAC6-220ENST00000477528 HEATR1Q9H583 2144 aaKnown RBP12.11□□□□□ -0.47
HDAC6-220ENST00000477528 C9JQL5 133 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 GFRA3O60609 400 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 MOSP00540 346 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 FAM106CPP0CH98 169 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 ECSCRQ19T08 205 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 NHLRC2Q8NBF2 726 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 FOXA2Q9Y261 457 aaPredicted RBP12.11□□□□□ -0.47
HDAC6-220ENST00000477528 C1QTNF9BB2RNN3 333 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 M0R143 59 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 UBE2CO00762 179 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms