RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF320A2RRD8 509 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 F8W735 103 aaPredicted RBP9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 S1PR2O95136 353 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SERPINE2P07093 398 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 DEFA4P12838 97 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TGFBR1P36897 503 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ALDH3B2P48448 385 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MFAP2P55001 183 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NCS1P62166 190 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 WT1-ASQ06250 92 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CATR1Q13166 79 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 GPR107Q5VW38 600 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SLC16A13Q7RTY0 426 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 WFDC3Q8IUB2 231 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR10W1Q8NGF6 305 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 VN1R17PQ8TDU5 208 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 AP3S1Q92572 193 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CMTM3Q96MX0 182 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ATP6V0BQ99437 205 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 HRASLSQ9HDD0 168 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NDUFA4L2Q9NRX3 87 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TMEM140Q9NV12 185 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 COMMD9Q9P000 198 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SELENOKQ9Y6D0 94 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 KMT2AQ03164 3969 aa9.13□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TGOLN2O43493 480 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SCAF4O95104 1147 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 GPR183P32249 361 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 RPL5P46777 297 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CTF1Q16619 201 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ANKRD55Q3KP44 614 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ZNF585BQ52M93 769 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 THOC7Q6I9Y2 204 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MZT2AQ6P582 158 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 BTNL8Q6UX41 500 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 GDPD1Q8N9F7 314 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR52B4Q8NGK2 314 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MOB3AQ96BX8 217 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 BCL7BQ9BQE9 202 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 GGTLC1Q9BX51 225 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 QTRT1Q9BXR0 403 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 COMMD5Q9GZQ3 224 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 C5orf66Q9H5L9 145 aa9.12□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 LOC102724200A0A096LPH7 203 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SMIM31A0A1B0GVY4 71 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MARCH11A6NNE9 402 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NOL3O60936 208 aaKnown RBP9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 PGLYRP1O75594 196 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 FCER2P06734 321 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TRAPPC2P0DI81 140 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TRAPPC2BP0DI82 140 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 F2RP25116 425 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ADMP35318 185 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 RFX2P48378 723 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 FXYD4P59646 89 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 PLET1Q6UQ28 207 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 HSD17B13Q7Z5P4 300 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 LYSMD2Q8IV50 215 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SAMD12Q8N8I0 201 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR51H1Q8NH63 302 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 RAB2BQ8WUD1 216 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TMEM190Q8WZ59 177 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 THYN1Q9P016 225 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 UFC1Q9Y3C8 167 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ALMS1Q8TCU4 4167 aa9.11□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 IGHV3-35A0A0C4DH35 117 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MEIS3P1A6NDR6 274 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TSPAN4O14817 238 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 JTBO76095 146 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 APOA1P02647 267 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR13C7P0DN81 318 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ZNF182P17025 639 aaPredicted RBP9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TMBIM6P55061 237 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TMEM69Q5SWH9 247 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 AADACL3Q5VUY0 350 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TMEM17Q86X19 198 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR2C3Q8N628 320 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR1L8Q8NGR8 309 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 FCAMRQ8WWV6 532 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 BORCS5Q969J3 196 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 DGCR14Q96DF8 476 aaKnown RBP9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 BSCL2Q96G97 398 aaPredicted RBP9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CHRDL1Q9BU40 450 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 COMMD3Q9UBI1 195 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TP53TG1Q9Y2A0 90 aa9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 F11RQ9Y624 299 aaKnown RBP9.1□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 K7EIM0 57 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 K7EMT4 169 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NDUFA4O00483 81 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 EWSR1Q01844 656 aaKnown RBP eCLIP9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TNFRSF9Q07011 255 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SPSB3Q6PJ21 355 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 Q6ZWC4 215 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CLVS1Q8IUQ0 354 aaPredicted RBP9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 DMBX1Q8NFW5 382 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OR1L6Q8NGR2 347 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SCARB1Q8WTV0 552 aa9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 SPAG8Q99932 426 aaPredicted RBP9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ZNF2Q9BSG1 426 aaPredicted RBP9.09□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NAA50Q9GZZ1 169 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms