RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CRYZL1O95825 349 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 HBE1P02100 147 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 GNAO1P09471 354 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 SERPINB10P48595 397 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 ETV1P50549 477 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 GBX2P52951 348 aaPredicted RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 RPL11P62913 178 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 MRPL28Q13084 256 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 ARFRP1Q13795 201 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 ACTL10Q5JWF8 245 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 OR2G6Q5TZ20 316 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 LRRTM1Q86UE6 522 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 BPIFB6Q8NFQ5 453 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 NRG4Q8WWG1 115 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 ZNF414Q96IQ9 312 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 TM2D1Q9BX74 207 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 RIMS4Q9H426 269 aaPredicted RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 CHMP1AQ9HD42 196 aaPredicted RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 Q9N2K0 584 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 FGF20Q9NP95 211 aaPredicted RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 C8orf4Q9NR00 106 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 MRPS18AQ9NVS2 196 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 CLEC2DQ9UHP7 191 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 RABAC1Q9UI14 185 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 MRPS16Q9Y3D3 137 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 YTHDF2Q9Y5A9 579 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 TRAV3A0A0B4J244 114 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 LINC00473A8K010 186 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 LYRM9A8MSI8 78 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 PTGES3LE9PB15 166 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 CASQ2O14958 399 aaPredicted RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 ST8SIA3O43173 380 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 ZNF207O43670 478 aaKnown RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 LIMS3P0CW19 117 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 LIMS4P0CW20 117 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 DCKP27707 260 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 FUSP35637 526 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP54-211ENST00000474929 ST3GAL4Q11206 333 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 THOC7Q6I9Y2 204 aaKnown RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 LAIR2Q6ISS4 152 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 TMPRSS11AQ6ZMR5 421 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 C8orf59Q8N0T1 100 aaPredicted RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 SYS1Q8N2H4 156 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 OR5AK2Q8NH90 309 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 TMEM80Q96HE8 168 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 NEDD4LQ96PU5 975 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 PDCD1LG2Q9BQ51 273 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 VCXQ9H320 206 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 VCX3BQ9H321 246 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 FAM212BQ9NTI7 297 aaPredicted RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 XCL2Q9UBD3 114 aa5.55□□□□□ -1.52
USP54-211ENST00000474929 MRPS7Q9Y2R9 242 aaKnown RBP5.55□□□□□ -1.52
USP54-211ENST00000474929 LOC102723971A0A1B0GUV8 181 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 A0A1W2PP11 408 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 IRGMA1A4Y4 181 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 F5H768 121 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 NUPL2O15504 423 aaKnown RBP5.54□□□□□ -1.52
USP54-211ENST00000474929 KBTBD11O94819 623 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 ATP5G1P05496 136 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 AREGP15514 252 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 MYL12AP19105 171 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 CALRP27797 417 aaKnown RBP5.54□□□□□ -1.52
USP54-211ENST00000474929 BDKRB2P30411 391 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 ATP5G3P48201 142 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 EIF2B2P49770 351 aaKnown RBP5.54□□□□□ -1.52
USP54-211ENST00000474929 HLA-DRB3P79483 266 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 XAF1Q6GPH4 301 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 SIGIRRQ6IA17 410 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 ZFP41Q8N8Y5 198 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 OR2D2Q9H210 308 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 OR51E2Q9H255 320 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 BABAM2Q9NXR7 383 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 C21orf62Q9NYP8 219 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 TAS2R4Q9NYW5 299 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 GOLT1BQ9Y3E0 138 aa5.54□□□□□ -1.52
USP54-211ENST00000474929 PNMA8CA0A1B0GUJ8 204 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 A0A1W2PPK0 400 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 A0A1W2PS18 150 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 EFCAB10A6NFE3 127 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 KNCNA6PVL3 124 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 YIF1AO95070 293 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 LALBAP00709 142 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 IL6RP08887 468 aaPredicted RBP5.53□□□□□ -1.52
USP54-211ENST00000474929 DNAH10OSP0CZ25 163 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 MGMTP16455 207 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 AQP4P55087 323 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 OR2B8PP59922 312 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 RRN3P1Q2M238 152 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 RPL22L1Q6P5R6 122 aaKnown RBP5.53□□□□□ -1.52
USP54-211ENST00000474929 ZNF880Q6PDB4 577 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 C19orf35Q6ZS72 473 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 AHSA2Q719I0 299 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 HSD17B13Q7Z5P4 300 aaPredicted RBP5.53□□□□□ -1.52
USP54-211ENST00000474929 ZNF114Q8NC26 417 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 SETD6Q8TBK2 473 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 TMEM167AQ8TBQ9 72 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 RNF141Q8WVD5 230 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 ORAI1Q96D31 301 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 Q96M66 194 aa5.53□□□□□ -1.52
USP54-211ENST00000474929 SELENOIQ9C0D9 397 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms