RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 OR8U8P0C7N1 319 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 METTL15P1P0C7V9 234 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 HTR2BP41595 481 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 RAB14P61106 215 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 ERHP84090 104 aaKnown RBP10.28□□□□□ -0.76
VPS13D-205ENST00000473099 TMEM267Q0VDI3 215 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-205ENST00000473099 NDUFA5Q16718 116 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 CYB5R2Q6BCY4 276 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 RPL7L1Q6DKI1 246 aaKnown RBP10.28□□□□□ -0.76
VPS13D-205ENST00000473099 HSD17B13Q7Z5P4 300 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-205ENST00000473099 LILRB2Q8N423 598 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 Q8N6K4 173 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 OR10P1Q8NGE3 313 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 LRRC20Q8TCA0 184 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 AJUBAQ96IF1 538 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 SMIM3Q9BZL3 60 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 MEGF9Q9H1U4 602 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 TSPAN9O75954 239 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 CFDP00746 253 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-205ENST00000473099 IFNA5P01569 189 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 FBP1P09467 338 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 TMEM11P17152 192 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 NPY1RP25929 384 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 RPL27AP46776 148 aaKnown RBP10.27□□□□□ -0.77
VPS13D-205ENST00000473099 COMPP49747 757 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-205ENST00000473099 SLC38A11Q08AI6 406 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 AANATQ16613 207 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 SPINK9Q5DT21 86 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 DYNAPQ8N1N2 210 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 TMEM217Q8N7C4 229 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 SLC24A4Q8NFF2 622 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 RITA1Q96K30 269 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 OR4C12Q96R67 309 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 GGACTQ9BVM4 153 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 HINT2Q9BX68 163 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 PARD6GQ9BYG4 376 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-205ENST00000473099 ARV1Q9H2C2 271 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 FAM96BQ9Y3D0 163 aa10.27□□□□□ -0.77
VPS13D-205ENST00000473099 C15orf62A8K5M9 175 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 SEC11BP0C7V7 166 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 CNTFRP26992 372 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 SNCAP37840 140 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 SUB1P53999 127 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS13D-205ENST00000473099 CLINT1Q14677 625 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 TNXAQ16473 311 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 C5orf64Q2M2E5 130 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 GNPNAT1Q96EK6 184 aaPredicted RBP10.26□□□□□ -0.77
VPS13D-205ENST00000473099 GINS3Q9BRX5 216 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 TMEM147Q9BVK8 224 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 SLC25A32Q9H2D1 315 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 FBXL15Q9H469 300 aa10.26□□□□□ -0.77
VPS13D-205ENST00000473099 PMS2P5A8MQ11 134 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 FNDC10F2Z333 226 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 HAX1O00165 279 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 BSXQ3C1V8 233 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 C2orf83Q53S99 150 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 CLLU1Q5K131 121 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 OR8G2PQ6IF36 304 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 SLC25A24Q6NUK1 477 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 ALKAL2Q6UX46 152 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 CLEC9AQ6UXN8 241 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 ETV3LQ6ZN32 361 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 NANPQ8TBE9 248 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 SCGB1C1Q8TD33 95 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 C17orf50Q8WW18 174 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 BSCL2Q96G97 398 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-205ENST00000473099 WFDC1Q9HC57 220 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 TPSG1Q9NRR2 321 aa10.25□□□□□ -0.77
VPS13D-205ENST00000473099 TEP1Q99973 2627 aaKnown RBP10.25□□□□□ -0.77
VPS13D-205ENST00000473099 IFNA4P05014 189 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 IGHV4-38-2P0DP08 117 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 DLK1P80370 383 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 HNF4GQ14541 408 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 MRGPRG-AS1Q2M3A8 158 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 LRRC75BQ2VPJ9 315 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 RUSC1-AS1Q66K80 236 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 BRD3OSQ6XYD6 125 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 HAPLN4Q86UW8 402 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 ZNF114Q8NC26 417 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 UQCC1Q9NVA1 299 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 PITPNC1Q9UKF7 332 aa10.24□□□□□ -0.77
VPS13D-205ENST00000473099 A0A0U1RQK1 487 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 NCBP2LA6PVI3 153 aaKnown RBP10.23□□□□□ -0.77
VPS13D-205ENST00000473099 SOX15O60248 233 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 MPDU1O75352 247 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 CNIH1O95406 144 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 CA2P00918 260 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 OPN1MWP04001 364 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 OPN1MW2P0DN77 364 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 OPN1MW3P0DN78 364 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 SPP1P10451 314 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 MYOD1P15172 320 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 RAB5CP51148 216 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 ARL16Q0P5N6 197 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 PJVKQ0ZLH3 352 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 VWC2Q2TAL6 325 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 KLF17Q5JT82 389 aaPredicted RBP10.23□□□□□ -0.77
VPS13D-205ENST00000473099 ZNF562Q6V9R5 426 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 C16orf82Q7Z2V1 217 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 MAPK1IP1LQ8NDC0 245 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms