RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ERVK-16P61578 105 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 THOC7Q6I9Y2 204 aaKnown RBP14.82□□□□□ -0.04
COL9A3-210ENST00000472880 SAMD12Q8N8I0 201 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 ZNF502Q8TBZ5 544 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 MARC2Q969Z3 335 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 S100A16Q96FQ6 103 aaKnown RBP14.82□□□□□ -0.04
COL9A3-210ENST00000472880 EHFQ9NZC4 300 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 COMMD9Q9P000 198 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 LYSTQ99698 3801 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 DNAH1Q9P2D7 4330 aa14.82□□□□□ -0.04
COL9A3-210ENST00000472880 FGF2P09038 288 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 CTF1Q16619 201 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 TM4SF20Q53R12 229 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 PLET1Q6UQ28 207 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 UNQ9165/PRO28630Q6UXU0 137 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 GGTLC1Q9BX51 225 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 UFC1Q9Y3C8 167 aa14.81□□□□□ -0.04
COL9A3-210ENST00000472880 RPA2P15927 270 aa14.8□□□□□ -0.04
COL9A3-210ENST00000472880 ALDH3B2P48448 385 aa14.8□□□□□ -0.04
COL9A3-210ENST00000472880 ZNF585BQ52M93 769 aa14.8□□□□□ -0.04
COL9A3-210ENST00000472880 GPR107Q5VW38 600 aa14.8□□□□□ -0.04
COL9A3-210ENST00000472880 RBPMS2Q6ZRY4 209 aaKnown RBP14.8□□□□□ -0.04
COL9A3-210ENST00000472880 GDPD1Q8N9F7 314 aa14.8□□□□□ -0.04
COL9A3-210ENST00000472880 MRPL27Q9P0M9 148 aaKnown RBP14.8□□□□□ -0.04
COL9A3-210ENST00000472880 TRAV25A0A0B4J276 109 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 IGHV3-35A0A0C4DH35 117 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 RLN1P04808 185 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 TRAPPC2P0DI81 140 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 TRAPPC2BP0DI82 140 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 PTBP1P26599 531 aaKnown RBP eCLIP14.79□□□□□ -0.04
COL9A3-210ENST00000472880 ELLP55199 621 aaPredicted RBP14.79□□□□□ -0.04
COL9A3-210ENST00000472880 TMEM69Q5SWH9 247 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 HSD17B13Q7Z5P4 300 aaPredicted RBP14.79□□□□□ -0.04
COL9A3-210ENST00000472880 OR10W1Q8NGF6 305 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 OR1L6Q8NGR2 347 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 VN1R17PQ8TDU5 208 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 COMMD3Q9UBI1 195 aa14.79□□□□□ -0.04
COL9A3-210ENST00000472880 LOC102724200A0A096LPH7 203 aaPredicted RBP14.78□□□□□ -0.04
COL9A3-210ENST00000472880 MARCH11A6NNE9 402 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 TGOLN2O43493 480 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 EIF4EP06730 217 aaKnown RBP14.78□□□□□ -0.04
COL9A3-210ENST00000472880 C8orf88P0DMB2 117 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 OR13C7P0DN81 318 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 GNRHRP30968 328 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 RORCP51449 518 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 TAS2R20P59543 309 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 GPR141Q7Z602 305 aa14.78□□□□□ -0.04
COL9A3-210ENST00000472880 ZNF2Q9BSG1 426 aaPredicted RBP14.78□□□□□ -0.04
COL9A3-210ENST00000472880 F2RP25116 425 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 SLC25A24Q6NUK1 477 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 OR1L8Q8NGR8 309 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 TMEM190Q8WZ59 177 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 MOB3AQ96BX8 217 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 CMTM3Q96MX0 182 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 HINT2Q9BX68 163 aa14.77□□□□□ -0.05
COL9A3-210ENST00000472880 ZNF436Q9C0F3 470 aaPredicted RBP14.77□□□□□ -0.05
COL9A3-210ENST00000472880 OR2T8A6NH00 312 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 APOA1P02647 267 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 SERPINE2P07093 398 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 RFX2P48378 723 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 TAS2R46P59540 309 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 WT1-ASQ06250 92 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 CMTM1Q8IZ96 169 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 SLC38A6Q8IZM9 456 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 OR5H2Q8NGV7 314 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 LSM10Q969L4 123 aaKnown RBP14.76□□□□□ -0.05
COL9A3-210ENST00000472880 BSCL2Q96G97 398 aaPredicted RBP14.76□□□□□ -0.05
COL9A3-210ENST00000472880 SPAG8Q99932 426 aaPredicted RBP14.76□□□□□ -0.05
COL9A3-210ENST00000472880 C5orf66Q9H5L9 145 aa14.76□□□□□ -0.05
COL9A3-210ENST00000472880 TEX50A0A1B0GTY4 177 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 PGLYRP1O75594 196 aaPredicted RBP14.75□□□□□ -0.05
COL9A3-210ENST00000472880 PMP2P02689 132 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 LPAR6P43657 344 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 DHRS11Q6UWP2 260 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 OR2C3Q8N628 320 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 DAZ1Q9NQZ3 744 aaKnown RBP14.75□□□□□ -0.05
COL9A3-210ENST00000472880 ANAPC10Q9UM13 185 aa14.75□□□□□ -0.05
COL9A3-210ENST00000472880 F11RQ9Y624 299 aaKnown RBP14.75□□□□□ -0.05
COL9A3-210ENST00000472880 EPPK1P58107 5090 aaKnown RBP14.75□□□□□ -0.05
COL9A3-210ENST00000472880 SNAPC5O75971 98 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 KRASP01116 189 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 SPSB3Q6PJ21 355 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 FCAMRQ8WWV6 532 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 DGCR14Q96DF8 476 aaKnown RBP14.74□□□□□ -0.05
COL9A3-210ENST00000472880 OVOL2Q9BRP0 275 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 FXYD6Q9H0Q3 95 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 NDUFA4L2Q9NRX3 87 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 C21orf62Q9NYP8 219 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 NSG2Q9Y328 171 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 OR51B2Q9Y5P1 312 aa14.74□□□□□ -0.05
COL9A3-210ENST00000472880 GPR31O00270 319 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 HPGDSO60760 199 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 ZNF182P17025 639 aaPredicted RBP14.73□□□□□ -0.05
COL9A3-210ENST00000472880 ELK1P19419 428 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 PRSS3P35030 304 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 G6PCP35575 357 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 LAMTOR1Q6IAA8 161 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 MZT2AQ6P582 158 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 UBAC2Q8NBM4 344 aa14.73□□□□□ -0.05
COL9A3-210ENST00000472880 OR6F1Q8NGZ6 308 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms