RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 RPEQ96AT9 228 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 PINX1Q96BK5 328 aaKnown RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 SAT2Q96F10 170 aaPredicted RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 CLCC1Q96S66 551 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 TSNAXQ99598 290 aaKnown RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 MS4A7Q9GZW8 240 aaPredicted RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 HIPK2Q9H2X6 1198 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 RBKSQ9H477 322 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 ONECUT1Q9UBC0 465 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 STRAPQ9Y3F4 350 aaKnown RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 IGSF23A1L1A6 192 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 TSPAN9O75954 239 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 IGKV1-16P04430 117 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 SPP1P10451 314 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 VDAC2P45880 294 aaPredicted RBP9.45□□□□□ -0.9
USP54-209ENST00000464635 EBI3Q14213 229 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 VMA21Q3ZAQ7 101 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 TPTE2P1Q5T6R2 138 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 BRD3OSQ6XYD6 125 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 THNSL2Q86YJ6 484 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 MRPL41Q8IXM3 137 aaKnown RBP9.45□□□□□ -0.9
USP54-209ENST00000464635 PDZD9Q8IXQ8 264 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 PNKDQ8N490 385 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 MALSU1Q96EH3 234 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 GNPNAT1Q96EK6 184 aaPredicted RBP9.45□□□□□ -0.9
USP54-209ENST00000464635 HARBI1Q96MB7 349 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 SRSF8Q9BRL6 282 aaKnown RBP9.45□□□□□ -0.9
USP54-209ENST00000464635 MAGT1Q9H0U3 335 aa9.45□□□□□ -0.9
USP54-209ENST00000464635 SRRM4A7MD48 611 aaKnown RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 PMS2P5A8MQ11 134 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 UMAD1C9J7I0 102 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 H7C2Y5 167 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 RBMXL2O75526 392 aaKnown RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 IFNA17P01571 189 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 IGLV2-23P01705 113 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 CRYGBP07316 175 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 S100A1P23297 94 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 SULT1A2P50226 295 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 PRCDQ00LT1 54 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 IZUMO4Q1ZYL8 232 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 VWC2Q2TAL6 325 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 RUSC1-AS1Q66K80 236 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 RPL7L1Q6DKI1 246 aaKnown RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 C9orf139Q6ZV77 190 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 HSD17B13Q7Z5P4 300 aaPredicted RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 CENPVQ7Z7K6 275 aaPredicted RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 EIF4E3Q8N5X7 224 aaKnown RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 OR5C1Q8NGR4 320 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 ATP5SQ99766 215 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 QTRT1Q9BXR0 403 aaKnown RBP9.44□□□□□ -0.9
USP54-209ENST00000464635 TCF19Q9Y242 345 aa9.44□□□□□ -0.9
USP54-209ENST00000464635 A0A1W2PN81 502 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 A0A1W2PPI3 338 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 CEBPZOSA8MTT3 80 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 KCNAB3O43448 404 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 TOX4O94842 621 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 RNASE1P07998 156 aaKnown RBP9.43□□□□□ -0.9
USP54-209ENST00000464635 NMBP08949 121 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 SAA1P0DJI8 122 aaPredicted RBP9.43□□□□□ -0.9
USP54-209ENST00000464635 CHRNA7P36544 502 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 BPIFB3P59826 476 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 RPS16P62249 146 aaKnown RBP9.43□□□□□ -0.9
USP54-209ENST00000464635 RAB11AP62491 216 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 RPL8P62917 257 aaKnown RBP9.43□□□□□ -0.9
USP54-209ENST00000464635 BLOC1S1P78537 153 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 SERF2P84101 59 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 DEFB112Q30KQ8 113 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 ALKAL2Q6UX46 152 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 DPPA3Q6W0C5 159 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 VMO1Q7Z5L0 202 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 MMD2Q8IY49 270 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 NPBQ8NG41 125 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 OR10P1Q8NGE3 313 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 OR1L8Q8NGR8 309 aa9.43□□□□□ -0.9
USP54-209ENST00000464635 PSMG3Q9BT73 122 aaPredicted RBP9.43□□□□□ -0.9
USP54-209ENST00000464635 TNCP24821 2201 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 RNASEK-C17orf49H0YIS7 233 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 IFNA5P01569 189 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 DYNLT3P51808 116 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 LGALS4P56470 323 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 BSXQ3C1V8 233 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 LYPD6BQ8NI32 183 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 TBX15Q96SF7 602 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 WFDC1Q9HC57 220 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 ENY2Q9NPA8 101 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 NDUFA4L2Q9NRX3 87 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 ZNRD1Q9P1U0 126 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 TIMM9Q9Y5J7 89 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 OR51B2Q9Y5P1 312 aa9.42□□□□□ -0.9
USP54-209ENST00000464635 PKD1L1Q8TDX9 2849 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 TET2Q6N021 2002 aaPredicted RBP9.41□□□□□ -0.9
USP54-209ENST00000464635 TEX50A0A1B0GTY4 177 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 CLDN34H7C241 214 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 HOXA3O43365 443 aaPredicted RBP9.41□□□□□ -0.9
USP54-209ENST00000464635 MPDU1O75352 247 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 NDUFA3O95167 84 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 IAPPP10997 89 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 MDKP21741 143 aaPredicted RBP9.41□□□□□ -0.9
USP54-209ENST00000464635 F2RL1P55085 397 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 FOXL1Q12952 345 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms