RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TTC9CQ8N5M4 171 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 OR2C3Q8N628 320 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 OR2K2Q8NGT1 345 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 VSTM2AQ8TAG5 236 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 ACOT12Q8WYK0 555 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 SPIN2AQ99865 258 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 SPIN2BQ9BPZ2 258 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 DCUN1D5Q9BTE7 237 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 ST6GALNAC5Q9BVH7 336 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 PALMDQ9NP74 551 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 TXNL4BQ9NX01 149 aaKnown RBP5.49□□□□□ -1.53
USP54-208ENST00000461520 PEMTQ9UBM1 199 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 ELF5Q9UKW6 265 aaPredicted RBP5.49□□□□□ -1.53
USP54-208ENST00000461520 MRPS7Q9Y2R9 242 aaKnown RBP5.49□□□□□ -1.53
USP54-208ENST00000461520 PRELID3BQ9Y3B1 194 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 SORL1Q92673 2214 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 LCE6AA0A183 80 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 FCGR3BO75015 233 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 NFYAP23511 347 aaPredicted RBP5.48□□□□□ -1.53
USP54-208ENST00000461520 RHOGP84095 191 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 DEFA5Q01523 94 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 ZNF45Q02386 682 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 ATP5G2Q06055 141 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 CNIH2Q6PI25 160 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 SLC25A42Q86VD7 318 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 PRR26Q8N8Z3 221 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 NECAP1Q8NC96 275 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 OR4S2Q8NH73 311 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 FCGR1BQ92637 280 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 ISOC1Q96CN7 298 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 HSD17B10Q99714 261 aaKnown RBP5.48□□□□□ -1.53
USP54-208ENST00000461520 OR51E2Q9H255 320 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 ZNF430Q9H8G1 570 aaPredicted RBP5.48□□□□□ -1.53
USP54-208ENST00000461520 EDA2RQ9HAV5 297 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 ANXA10Q9UJ72 324 aa5.48□□□□□ -1.53
USP54-208ENST00000461520 RBMX2Q9Y388 322 aaKnown RBP5.48□□□□□ -1.53
USP54-208ENST00000461520 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 SMIM30A4D0T7 59 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 TMEM235A6NFC5 223 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 J3QRK9 145 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 BMPR1BO00238 502 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 PRH1P02810 166 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 PSMB9P28065 219 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 MAS1LP35410 378 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 GNG2P59768 71 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 RPL30P62888 115 aaKnown RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 EIF4EBP1Q13541 118 aaPredicted RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 EXOSC2Q13868 293 aaKnown RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 HAGHQ16775 308 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 C15orf32Q32M92 178 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 ZFAND6Q6FIF0 208 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 SFXN4Q6P4A7 337 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 TMEM88Q6PEY1 159 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 LAX1Q8IWV1 398 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 PUSL1Q8N0Z8 303 aaKnown RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 OR2A7Q96R45 310 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 TUBA4BQ9H853 241 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 DAPK2Q9UIK4 370 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 SSR3Q9UNL2 185 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 ZNF257Q9Y2Q1 563 aa5.47□□□□□ -1.53
USP54-208ENST00000461520 RRP15Q9Y3B9 282 aaKnown RBP5.47□□□□□ -1.53
USP54-208ENST00000461520 A0A0A6YYH2 397 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 IGKV1D-13A0A0B4J2D9 117 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 IZUMO1RA6ND01 250 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 GAGE12JA6NER3 117 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 A6NJ64 397 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 IFITM10A6NMD0 228 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 NPIPB5A8MRT5 1133 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 TEX22C9J3V5 150 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 LGALS9O00182 355 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 SSX5O60225 188 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 GGCTO75223 188 aaKnown RBP5.46□□□□□ -1.54
USP54-208ENST00000461520 OR2J3O76001 311 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 KBTBD11O94819 623 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 DHFRP00374 187 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 HRASP01112 189 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 IFNA6P05013 189 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 CRYGCP07315 174 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 ZNF735P0CB33 412 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 IGKV1-13P0DP09 117 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 KIR2DS2P43631 304 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 RPL27AP46776 148 aaKnown RBP5.46□□□□□ -1.54
USP54-208ENST00000461520 MSMO1Q15800 293 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 KLK9Q2XQG4 91 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 OR2B11Q5JQS5 317 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 C10orf55Q5SWW7 151 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 LINC00322Q6ZN03 302 aaPredicted RBP5.46□□□□□ -1.54
USP54-208ENST00000461520 Q6ZTC4 211 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 VKORC1L1Q8N0U8 176 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 TMEM167AQ8TBQ9 72 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 LGALS14Q8TCE9 139 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 TCTEX1D2Q8WW35 142 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 YTHDF1Q9BYJ9 559 aaKnown RBP5.46□□□□□ -1.54
USP54-208ENST00000461520 Q9H521 79 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 SLC2A9Q9NRM0 540 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 RHBDL2Q9NX52 303 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 SLC2A8Q9NY64 477 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 KLK9Q9UKQ9 250 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 SPATA2Q9UM82 520 aa5.46□□□□□ -1.54
USP54-208ENST00000461520 ETV7Q9Y603 341 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms