RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 C18orf32Q8TCD1 76 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 TNRC6AQ8NDV7 1962 aaKnown RBP9.68□□□□□ -0.86
CPSF3-202ENST00000460593 ICE1Q9Y2F5 2266 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 hDV102S1A0JD36 115 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 M0R2Z0 102 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 HAND1O96004 215 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 CA7P43166 264 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 FOXF2Q12947 444 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 SGK494Q96LW2 274 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 HSD17B10Q99714 261 aaKnown RBP9.68□□□□□ -0.86
CPSF3-202ENST00000460593 WASHC3Q9Y3C0 194 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 FAM166BA8MTA8 275 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 PROP1O75360 226 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 HSBP1O75506 76 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 CAMPP49913 170 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 Q0VFX4 171 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 EDDM3AQ14507 147 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 RPL39P5Q59GN2 51 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF841Q6ZN19 808 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 MOB1BQ7L9L4 216 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 LINC00596Q86U02 117 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 OR13A1Q8NGR1 328 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 MUC3AQ02505 3323 aa9.68□□□□□ -0.86
CPSF3-202ENST00000460593 TRGV10A0A0A0MS01 117 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR5B21A6NL26 309 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 FOXE3Q13461 319 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR10J3Q5JRS4 329 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 HES3Q5TGS1 186 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 LEAP2Q969E1 77 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 COQ2Q96H96 371 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 FAM181BA6NEQ2 426 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR7C2O60412 319 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR4A47Q6IF82 309 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR4A16Q8NH70 328 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 KCNE4Q8WWG9 221 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 CDX2Q99626 313 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF891A8MT65 544 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-202ENST00000460593 SS18L1O75177 396 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-202ENST00000460593 AMY1AP04745 511 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 PLP2Q04941 152 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 MLANAQ16655 118 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 IBA57Q5T440 356 aaKnown RBP9.67□□□□□ -0.86
CPSF3-202ENST00000460593 AMMECR1LQ6DCA0 310 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 PRR27Q6MZM9 219 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 OR8B2Q96RD0 313 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 PMCHL2Q9BQD1 86 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 CST9LQ9H4G1 147 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 MRPS16Q9Y3D3 137 aaKnown RBP9.67□□□□□ -0.86
CPSF3-202ENST00000460593 MPC1Q9Y5U8 109 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 ARL2-SNX15V9GYD0 113 aa9.67□□□□□ -0.86
CPSF3-202ENST00000460593 LOC400499M0QZD8 3231 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 SMG1Q96Q15 3661 aaKnown RBP9.66□□□□□ -0.86
CPSF3-202ENST00000460593 MUC21A0A0G2JKD1 596 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 MUC21A0A140T8X8 626 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 GGTLC3B5MD39 225 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 SNAI2O43623 268 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 GFRA3O60609 400 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 NUDT3O95989 172 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 BPIFB3P59826 476 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 MUC21Q5SSG8 566 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 FAM214BQ7L5A3 538 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 SPACA3Q8IXA5 215 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 OR52E5Q8NH55 327 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF355PQ9NSJ1 428 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 FZR1Q9UM11 496 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 TRAV9-2A0A087WT02 112 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 LOC102723996A0A087X1L8 192 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 LY6G6EA0A0G2JKS1 128 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 IGHV1-69-2A0A0G2JMI3 117 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 MFAP2P55001 183 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 FOXA3P55318 350 aaPredicted RBP9.66□□□□□ -0.86
CPSF3-202ENST00000460593 RIPPLY3P57055 190 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 U3KQA8 63 aa9.66□□□□□ -0.86
CPSF3-202ENST00000460593 SAA2-SAA4A0A096LPE2 208 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 TMEM30CPA0ZSE6 113 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 PRSS46E5RG02 174 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 CORTO00230 105 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 DNPH1O43598 174 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 TIGITQ495A1 244 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 MDP1Q86V88 176 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 PKIBQ9C010 78 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 HES4Q9HCC6 221 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 C9JCJ5 164 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 M0R1X1 148 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 TAX1BP3O14907 124 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 IGLV2-8P01709 118 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 ERVK11-1P61568 191 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 RHOBP62745 196 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 OCIAD2Q56VL3 154 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 WDR73Q6P4I2 378 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 LHFPL4Q7Z7J7 247 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 MUC15Q8N387 334 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF503Q96F45 646 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 TAAR6Q96RI8 345 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 RTL8AQ9BWD3 113 aa9.65□□□□□ -0.86
CPSF3-202ENST00000460593 TRAV9-1A0A075B6T8 112 aa9.65□□□□□ -0.87
CPSF3-202ENST00000460593 TRAV5A0A0B4J249 113 aa9.65□□□□□ -0.87
CPSF3-202ENST00000460593 PRB4P10163 310 aaPredicted RBP9.65□□□□□ -0.87
CPSF3-202ENST00000460593 VDAC2P45880 294 aaPredicted RBP9.65□□□□□ -0.87
CPSF3-202ENST00000460593 TCTAP57738 103 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms