RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 UBE2E1P51965 193 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 LMO4P61968 165 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 MMDQ15546 238 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 FAM122CQ6P4D5 195 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 Q8N7P7 452 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 C10orf105Q8TEF2 133 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 RBFOX3A6NFN3 312 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 RRHO14718 337 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 NBR2O15453 112 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 C1QL1O75973 258 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 VENTXO95231 258 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 FAM106CPP0CH98 169 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 RNASE2P10153 161 aaKnown RBP4.87□□□□□ -1.63
VPS50-205ENST00000441602 CDC34P49427 236 aaPredicted RBP4.87□□□□□ -1.63
VPS50-205ENST00000441602 TUSC1Q2TAM9 212 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 KHDC3LQ587J8 217 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 LCN15Q6UWW0 184 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 SLC16A13Q7RTY0 426 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 TMEM144Q7Z5S9 345 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 MALSU1Q96EH3 234 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 SIRPDQ9H106 197 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 RPRMQ9NS64 109 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 POLR3KQ9Y2Y1 108 aaPredicted RBP4.87□□□□□ -1.63
VPS50-205ENST00000441602 SIGLEC9Q9Y336 463 aa4.87□□□□□ -1.63
VPS50-205ENST00000441602 HIVEP3Q5T1R4 2406 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 ABCA4P78363 2273 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 MALRD1Q5VYJ5 2156 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 A0A1B0GV50 99 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 A0A1W2PPI3 338 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 IGLV2-23P01705 113 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 OPN1MWP04001 364 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 OPN1MW2P0DN77 364 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 OPN1MW3P0DN78 364 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 PSMB3P49720 205 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 RHOBP62745 196 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 GNB1P62873 340 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 CD69Q07108 199 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 PPP1R27Q86WC6 154 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 IQCF2Q8IXL9 164 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 RCC1LQ96I51 464 aaKnown RBP4.86□□□□□ -1.63
VPS50-205ENST00000441602 C19orf24Q9BVV8 132 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 SLC35B3Q9H1N7 401 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 MANBALQ9NQG1 85 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 CARHSP1Q9Y2V2 147 aaKnown RBP4.86□□□□□ -1.63
VPS50-205ENST00000441602 HILPDAQ9Y5L2 63 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 PXMP4Q9Y6I8 212 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 WDFY4Q6ZS81 3184 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 CD5P06127 495 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 SFTA3P0C7M3 94 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 HOXB4P17483 251 aaPredicted RBP4.86□□□□□ -1.63
VPS50-205ENST00000441602 SELENOTP62341 195 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 KLRD1Q13241 179 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 DIAPH2-AS1Q14236 149 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 ZNF506Q5JVG8 444 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 TMEM231Q9H6L2 316 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 BEX4Q9NWD9 120 aaPredicted RBP4.86□□□□□ -1.63
VPS50-205ENST00000441602 PLA2G2EQ9NZK7 142 aa4.86□□□□□ -1.63
VPS50-205ENST00000441602 A0A1W2PRD5 423 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 A0A1W2PRF3 423 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 A0A1W2PRM7 423 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 IGKV1D-33P01593 117 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 IGKV1-33P01594 117 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 HSPB1P04792 205 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 TMEM11P17152 192 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 GATA3P23771 443 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 RPL29P47914 159 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 TAS2R45P59539 299 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 B2MP61769 119 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 SOHLH1Q5JUK2 328 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 S100A7AQ86SG5 101 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 IGFBPL1Q8WX77 278 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 BBC3Q96PG8 261 aaPredicted RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 P2RX4Q99571 388 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 FBXL15Q9H469 300 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 GNG13Q9P2W3 67 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 FAM96BQ9Y3D0 163 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 PKD1L2Q7Z442 2459 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 TRAV20A0A0B4J274 112 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 NDUFS6O75380 124 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 PAX1P15863 534 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 ZFP36P26651 326 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 FHITP49789 147 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 BPIFB3P59826 476 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 PMS2P11Q13670 270 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 SSX2Q16385 188 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 TREML4Q6UXN2 200 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 OR1L4Q8NGR5 311 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 SUN5Q8TC36 379 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 PERPQ96FX8 193 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 EAF1Q96JC9 268 aaPredicted RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 TXNDC17Q9BRA2 123 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 GGTLC1Q9BX51 225 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 VAX2Q9UIW0 290 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 SPTBN1Q01082 2364 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 ACACBO00763 2458 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 LOC102723971A0A1B0GUV8 181 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 NPFFO15130 113 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 CRYGBP07316 175 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 BCL2P10415 239 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 HABP2Q14520 560 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms