RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FAM19A2Q8N3H0 131 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 OR8B3Q8NGG8 313 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 SRSF8Q9BRL6 282 aaKnown RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 SPANXA1Q9NS26 97 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TRBV9A0A0B4J1U6 114 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TRBV5-5A0A0J9YX44 114 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 IGSF23A1L1A6 192 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 MT-ND6P03923 174 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 PHLDA2Q53GA4 152 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 MDP1Q86V88 176 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 CXorf67Q86X51 503 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 RBMXL3Q8N7X1 1067 aaKnown RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 SPRR3Q9UBC9 169 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 KLHDC2Q9Y2U9 406 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 A0A087WV48 116 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TRAV38-1A0A0B4J264 116 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 CTRLP40313 264 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 HBG1P69891 147 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 HBG2P69892 147 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TMEM97Q5BJF2 176 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 GLIPR1L1Q6UWM5 242 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 A0A1W2PNU3 283 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 MBD3L4A6NDZ8 208 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 MBD3L3A6NE82 208 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 MBD3L5A6NJ08 208 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 H3BRM9 83 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 SPINK4O60575 86 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 CA7P43166 264 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 OTOGLQ3ZCN5 2332 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TRAT1Q6PIZ9 186 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TMEM136Q6ZRR5 245 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 MBD3L2Q8NHZ7 208 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 TMEM204Q9BSN7 226 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 CXXC4Q9H2H0 198 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 HES4Q9HCC6 221 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 OR7C1O76099 320 aaPredicted RBP8.25□□□□□ -1.09
USP54-205ENST00000424265 G6PCP35575 357 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 LINC01590Q5TEZ4 76 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 A0A087X0K7 114 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 HBZP02008 142 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 KIAA1644Q3SXP7 199 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GRAMD2BQ96HH9 432 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 AGMATQ9BSE5 352 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 HILPDAQ9Y5L2 63 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 SNRNP200O75643 2136 aaKnown RBP8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE12JA6NER3 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 TMEM250H0YL14 139 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 F2RL2O00254 374 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE7O76087 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 ISG15P05161 165 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE12FP0CL80 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE12GP0CL81 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE12IP0CL82 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GLI4P10075 376 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 GAGE4Q13068 117 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 OR10J3Q5JRS4 329 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 LCN12Q6JVE5 192 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 TMEM230Q96A57 120 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 ZC2HC1AQ96GY0 325 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 UHRF2Q96PU4 802 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 TMEM70Q9BUB7 260 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 TSPAN13O95857 204 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 SMIM13P0DJ93 91 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 PSG4Q00888 419 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 ZNF585BQ52M93 769 aa8.25□□□□□ -1.09
USP54-205ENST00000424265 TEX50A0A1B0GTY4 177 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 SRIP30626 198 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 EMP1P54849 157 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 RNASE6Q93091 150 aaKnown RBP8.24□□□□□ -1.09
USP54-205ENST00000424265 SNRNP40Q96DI7 357 aaKnown RBP8.24□□□□□ -1.09
USP54-205ENST00000424265 ZNF732B4DXR9 585 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 YPEL1O60688 119 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 SHISA5Q8N114 240 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 OR10AC1Q8NH08 325 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 YPEL2Q96QA6 119 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 IGLL1P15814 213 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 SCCPDHQ8NBX0 429 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 TRBV5-7A0A0A0MS05 114 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 CD300LBA8K4G0 201 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 C17orf51A8MQB3 221 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 SLC25A6P12236 298 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 FSTP19883 344 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 SAMD5Q5TGI4 173 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 NAA60Q9H7X0 242 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 GNB4Q9HAV0 340 aa8.24□□□□□ -1.09
USP54-205ENST00000424265 KIR2DS1A0A191URI9 304 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 C1QTNF9BB2RNN3 333 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 C1QTNF9P0C862 333 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 KIR2DS4P43632 304 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 Q0VG73 95 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 KIR2DS1Q14954 304 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 C9orf106Q8NAJ2 232 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 MAP1LC3CQ9BXW4 147 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 PROK2Q9HC23 129 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 LHFPL6Q9Y693 200 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 C11orf94C9JXX5 98 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 EFNA2O43921 213 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 APCSP02743 223 aa8.23□□□□□ -1.09
USP54-205ENST00000424265 RPL15P61313 204 aaKnown RBP8.23□□□□□ -1.09
USP54-205ENST00000424265 RHOBP62745 196 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms