RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 OR2T6Q8NHC8 308 aa16.13■□□□□ 0.17
VSX1-203ENST00000409285 GRPEL2Q8TAA5 225 aa16.13■□□□□ 0.17
VSX1-203ENST00000409285 PARP11Q9NR21 331 aa16.13■□□□□ 0.17
VSX1-203ENST00000409285 IFNA17P01571 189 aa16.12■□□□□ 0.17
VSX1-203ENST00000409285 NKX2-1P43699 371 aaPredicted RBP16.12■□□□□ 0.17
VSX1-203ENST00000409285 CHAC2Q8WUX2 184 aa16.12■□□□□ 0.17
VSX1-203ENST00000409285 A0A1W2PN81 502 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 IGLC7A0M8Q6 106 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 MSGN1A6NI15 193 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 PFDN1O60925 122 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 OPN1MWP04001 364 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 OPN1MW2P0DN77 364 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 OPN1MW3P0DN78 364 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 CHRNA7P36544 502 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 CXorf66Q5JRM2 361 aaPredicted RBP16.11■□□□□ 0.17
VSX1-203ENST00000409285 MRPL41Q8IXM3 137 aaKnown RBP16.11■□□□□ 0.17
VSX1-203ENST00000409285 SERTAD4Q9NUC0 356 aa16.11■□□□□ 0.17
VSX1-203ENST00000409285 MED6O75586 246 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 SIX6O95475 246 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 HKR1P10072 659 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 VDAC2P45880 294 aaPredicted RBP16.1■□□□□ 0.17
VSX1-203ENST00000409285 TMEM267Q0VDI3 215 aaPredicted RBP16.1■□□□□ 0.17
VSX1-203ENST00000409285 ASPHD1Q5U4P2 390 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 AKAP14Q86UN6 197 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 STPG2Q8N412 459 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 FAM103A1Q9BTL3 118 aaKnown RBP16.1■□□□□ 0.17
VSX1-203ENST00000409285 GON7Q9BXV9 100 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 ZNF436Q9C0F3 470 aaPredicted RBP16.1■□□□□ 0.17
VSX1-203ENST00000409285 PLEKHA3Q9HB20 300 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 ZFP57Q9NU63 452 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 GSKIPQ9P0R6 139 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 LY86O95711 162 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 GIPP09681 153 aaPredicted RBP16.1■□□□□ 0.17
VSX1-203ENST00000409285 WT1-ASQ06250 92 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 LFNGQ8NES3 379 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 OR4F5Q8NH21 305 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 ABHD5Q8WTS1 349 aa16.1■□□□□ 0.17
VSX1-203ENST00000409285 TRAV41A0A0B4J266 112 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 NPIPB5A8MRT5 1133 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 SYNGR2O43760 224 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 MBPP02686 304 aaPredicted RBP16.09■□□□□ 0.17
VSX1-203ENST00000409285 CFHR3Q02985 330 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 TMEM95Q3KNT9 176 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 ARSJQ5FYB0 599 aaPredicted RBP16.09■□□□□ 0.17
VSX1-203ENST00000409285 ZNF114Q8NC26 417 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 OR10W1Q8NGF6 305 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 WNT10AQ9GZT5 417 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 RBKSQ9H477 322 aa16.09■□□□□ 0.17
VSX1-203ENST00000409285 COL6A5A8TX70 2615 aa16.08■□□□□ 0.17
VSX1-203ENST00000409285 CCNKO75909 580 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 CRYGCP07315 174 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 PPIFP30405 207 aaKnown RBP16.08■□□□□ 0.16
VSX1-203ENST00000409285 SRSF2Q01130 221 aaKnown RBP16.08■□□□□ 0.16
VSX1-203ENST00000409285 CD83Q01151 205 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 TTC9CQ8N5M4 171 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 LINC01006Q8NI28 216 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 DTD1Q8TEA8 209 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 HINT2Q9BX68 163 aa16.08■□□□□ 0.16
VSX1-203ENST00000409285 RCL1Q9Y2P8 373 aaKnown RBP16.08■□□□□ 0.16
VSX1-203ENST00000409285 FBN1P35555 2871 aaKnown RBP16.07■□□□□ 0.16
VSX1-203ENST00000409285 CEBPZOSA8MTT3 80 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 NXPH3O95157 252 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 BRI3O95415 125 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 AREGP15514 252 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 HOXA1P49639 335 aaPredicted RBP16.07■□□□□ 0.16
VSX1-203ENST00000409285 ECSCRQ19T08 205 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 OR2C3Q8N628 320 aa16.07■□□□□ 0.16
VSX1-203ENST00000409285 NOL4LQ96MY1 436 aaPredicted RBP16.07■□□□□ 0.16
VSX1-203ENST00000409285 CIB3Q96Q77 187 aaPredicted RBP16.07■□□□□ 0.16
VSX1-203ENST00000409285 A0A1B0GUS0 222 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 G3V318 75 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 K7EPK0 472 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 CTRB1P17538 263 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 PSMB6P28072 239 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 RAP2BP61225 183 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 KLK9Q2XQG4 91 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 BSXQ3C1V8 233 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 SPINK9Q5DT21 86 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 CTRB2Q6GPI1 263 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 UNQ5815/PRO19632Q6UWF5 114 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 FAM110DQ8TAY7 271 aaPredicted RBP16.06■□□□□ 0.16
VSX1-203ENST00000409285 PPP1R1CQ8WVI7 109 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 NEURL2Q9BR09 285 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 ENY2Q9NPA8 101 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 KLK9Q9UKQ9 250 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 TENM1Q9UKZ4 2725 aa16.06■□□□□ 0.16
VSX1-203ENST00000409285 WRBO00258 174 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 SCGB1D2O95969 90 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 OR13C7P0DN81 318 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 POLR2GP62487 172 aaKnown RBP eCLIP16.05■□□□□ 0.16
VSX1-203ENST00000409285 ERHP84090 104 aaKnown RBP16.05■□□□□ 0.16
VSX1-203ENST00000409285 RAB32Q13637 225 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.05■□□□□ 0.16
VSX1-203ENST00000409285 WIPF2Q8TF74 440 aaPredicted RBP16.05■□□□□ 0.16
VSX1-203ENST00000409285 TAF15Q92804 592 aaKnown RBP eCLIP16.05■□□□□ 0.16
VSX1-203ENST00000409285 RAB40CQ96S21 281 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 MAGT1Q9H0U3 335 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 HIPK2Q9H2X6 1198 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 WSB1Q9Y6I7 421 aa16.05■□□□□ 0.16
VSX1-203ENST00000409285 TMEM89A2RUT3 159 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms