RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 S1PR3Q99500 378 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 MGAQ8IWI9 3026 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 IGKV1D-17A0A075B6S4 117 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 CTXND1A0A1B0GTU2 59 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 LINC00473A8K010 186 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 C15orf65H3BRN8 121 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 P0C879 139 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 CFHR2P36980 270 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 RPS16P62249 146 aaKnown RBP8□□□□□ -1.13
COL6A3-204ENST00000392003 FAM27E3Q08E93 113 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 MORN2Q502X0 79 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 FBLN7Q53RD9 439 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 SPINK9Q5DT21 86 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 SEM1Q6ZVN7 128 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 OR10G9Q8NGN4 311 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 OR10G7Q8NGN6 311 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 ZDHHC16Q969W1 377 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 SFXN3Q9BWM7 321 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 YPEL1O60688 119 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 CD55P08174 381 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 ELOBQ15370 118 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 SP5Q6BEB4 398 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF474Q6S9Z5 364 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 TMEM144Q7Z5S9 345 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 BOD1L2Q8IYS8 172 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 GCSAMQ8N6F7 178 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 OR2D3Q8NGH3 330 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 YPEL2Q96QA6 119 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 SLC25A22Q9H936 323 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 HEYLQ9NQ87 328 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 TBL2Q9Y4P3 447 aaKnown RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 FAM215AQ9Y5M1 114 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 FAM87AP0C7U9 286 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 DUTP33316 252 aaKnown RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 KIR2DS2P43631 304 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF726P1Q15940 193 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 C1orf87Q8N0U7 546 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 ZNRF1Q8ND25 227 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 SMIM12Q96EX1 92 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 RNF7Q9UBF6 113 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 SPTBN4Q9H254 2564 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 DLL1O00548 723 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 TIMP3P35625 211 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 RAB9AP51151 201 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 TBR1Q16650 682 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 ACOT6Q3I5F7 207 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-204ENST00000392003 C3orf36Q3SXR2 165 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 SAMD13Q5VXD3 122 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 CALYQ9NYX4 217 aa7.99□□□□□ -1.13
COL6A3-204ENST00000392003 TNFAIP6P98066 277 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 ORAOV1Q8WV07 137 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 AGMATQ9BSE5 352 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 QTRT1Q9BXR0 403 aaKnown RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 USF3Q68DE3 2245 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 TRGV10A0A0A0MS01 117 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 FAM90A9PA6NNJ1 464 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 HMGB3O15347 200 aaKnown RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 IGHV3-7P01780 117 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 CLEC3BP05452 202 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 PPIAL4GP0DN37 164 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 MAS1LP35410 378 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 BRWD1-AS2P59051 145 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 LINC00205P59089 165 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 FAM90A2PQ658T7 463 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 CENPVQ7Z7K6 275 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 RPP25LQ8N5L8 163 aaKnown RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 RNASEH2CQ8TDP1 164 aaKnown RBP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 SMIM7Q9BQ49 75 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 TRGV8A0A0C4DH27 118 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 CLDN34H7C241 214 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 RBFOX2O43251 390 aaKnown RBP eCLIP7.98□□□□□ -1.13
COL6A3-204ENST00000392003 GNB2P62879 340 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 MSMPQ1L6U9 139 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 DEFB108BQ8NET1 73 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 OR4S2Q8NH73 311 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 SDSLQ96GA7 329 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 ZC2HC1AQ96GY0 325 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 ENY2Q9NPA8 101 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 MANBALQ9NQG1 85 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 PGPEP1Q9NXJ5 209 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 PAM16Q9Y3D7 125 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 PLCE1Q9P212 2302 aa7.98□□□□□ -1.13
COL6A3-204ENST00000392003 IGHV2-70DA0A0C4DH43 119 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 A0A1B0GW15 77 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 C16orf97H3BN30 126 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 OR9G9P0C7N8 305 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 MEF2BQ02080 365 aaPredicted RBP7.97□□□□□ -1.13
COL6A3-204ENST00000392003 ACSM6Q6P461 480 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PKDREJQ9NTG1 2253 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 AKAP13Q12802 2813 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PPIAL4EA0A075B759 164 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PPIAL4CA0A0B4J2A2 164 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF705FA8MVS1 300 aaPredicted RBP7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PPIAL4DF5H284 164 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 F2RL2O00254 374 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF705DP0CH99 300 aaPredicted RBP7.97□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF705BP0CI00 300 aaPredicted RBP7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PPIAL4FP0DN26 164 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 TFF3Q07654 80 aa7.97□□□□□ -1.13
COL6A3-204ENST00000392003 PMS2P11Q13670 270 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms