RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HABP2Q14520 560 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-202ENST00000372405 PSG5Q15238 335 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 VMA21Q3ZAQ7 101 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 ETV3LQ6ZN32 361 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 SLC24A4Q8NFF2 622 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 LINC00052Q96N35 136 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 CELSR1Q9NYQ6 3014 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 UMAD1C9J7I0 102 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 TRIM77I1YAP6 450 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 NPY1RP25929 384 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 DVL1P1P54792 670 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-202ENST00000372405 F2RL1P55085 397 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 RPP30P78346 268 aaKnown RBP11.06□□□□□ -0.64
PTPRF-202ENST00000372405 ZNF616Q08AN1 781 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 HNF4GQ14541 408 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 BSXQ3C1V8 233 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 FAM213BQ8TBF2 198 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 AJUBAQ96IF1 538 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 PSMG3Q9BT73 122 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-202ENST00000372405 COMMD5Q9GZQ3 224 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 VSIRQ9H7M9 311 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 ABCA12Q86UK0 2595 aa11.06□□□□□ -0.64
PTPRF-202ENST00000372405 RAB19A4D1S5 217 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 CEACAM3P40198 252 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 SSX2Q16385 188 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 ZNF787Q6DD87 383 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 CENPVQ7Z7K6 275 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-202ENST00000372405 TEX45Q8NA69 505 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 OR1L8Q8NGR8 309 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 ENY2Q9NPA8 101 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 SIGLEC9Q9Y336 463 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 ZFHX3Q15911 3703 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 AGPAT2O15120 278 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 CD24P25063 80 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 SSBP2P81877 361 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-202ENST00000372405 AKR1C1Q04828 323 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 WT1-ASQ06250 92 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 PRSS8Q16651 343 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 IL34Q6ZMJ4 242 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 C1orf159Q96HA4 380 aa11.05□□□□□ -0.64
PTPRF-202ENST00000372405 INS-IGF2F8WCM5 200 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 IFNA4P05014 189 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 RNASE2P10153 161 aaKnown RBP11.04□□□□□ -0.64
PTPRF-202ENST00000372405 PLA2G2AP14555 144 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 FGF7P21781 194 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 CD1BP29016 333 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 RAB11AP62491 216 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 TUSC1Q2TAM9 212 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 NPCDR1Q9BY65 106 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 RPRMQ9NS64 109 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 WDR83OSQ9Y284 106 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 DOPEY2Q9Y3R5 2298 aa11.04□□□□□ -0.64
PTPRF-202ENST00000372405 SCAF4O95104 1147 aaKnown RBP11.03□□□□□ -0.64
PTPRF-202ENST00000372405 UBE2E1P51965 193 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 PAX8Q06710 450 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 ARSJQ5FYB0 599 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-202ENST00000372405 AKR1C8PQ5T2L2 129 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 MINOS1Q5TGZ0 78 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 SPSB3Q6PJ21 355 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 TREML4Q6UXN2 200 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 BPIFCQ8NFQ6 507 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 GGACTQ9BVM4 153 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 SCRT1Q9BWW7 348 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 FBXL15Q9H469 300 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 METTL1Q9UBP6 276 aaKnown RBP11.03□□□□□ -0.64
PTPRF-202ENST00000372405 TIMM9Q9Y5J7 89 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 MINOS1-NBL1R4GNA1 71 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 NUDT19A8MXV4 375 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 FCN1O00602 326 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 IGKV1D-33P01593 117 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 IGKV1-33P01594 117 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 ZP3P21754 424 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 DLK1P80370 383 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 SERF2P84101 59 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 C2orf83Q53S99 150 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 ACSM6Q6P461 480 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 PPP1R27Q86WC6 154 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 RNF5Q99942 180 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 TMEM231Q9H6L2 316 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 FAM96BQ9Y3D0 163 aa11.03□□□□□ -0.64
PTPRF-202ENST00000372405 A0A1B0GV50 99 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 TSPAN15O95858 294 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 SNCAP37840 140 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 ELLP55199 621 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-202ENST00000372405 CCL20P78556 96 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 ZNF726P1Q15940 193 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 UQCC3Q6UW78 93 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 SSX7Q7RTT5 188 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 MMD2Q8IY49 270 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 EAF1Q96JC9 268 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-202ENST00000372405 APCP25054 2843 aa11.02□□□□□ -0.65
PTPRF-202ENST00000372405 HELZ2Q9BYK8 2649 aaKnown RBP11.02□□□□□ -0.65
PTPRF-202ENST00000372405 IGLC7A0M8Q6 106 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 SNRNP70P08621 437 aaKnown RBP11.01□□□□□ -0.65
PTPRF-202ENST00000372405 COMPP49747 757 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-202ENST00000372405 LGALS4P56470 323 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 PIP4P2Q8N4L2 257 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 LSM4Q9Y4Z0 139 aaKnown RBP11.01□□□□□ -0.65
PTPRF-202ENST00000372405 CENPVL3A0A0U1RRI6 287 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 A0A1W2PN81 502 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms