RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TMEM68Q96MH6 324 aa17.31■□□□□ 0.36
SHMT1-203ENST00000354098 INMT-MINDY4F8WBC2 141 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 ST8SIA3O43173 380 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 RPLP1P05386 114 aaKnown RBP17.3■□□□□ 0.36
SHMT1-203ENST00000354098 HOXB5P09067 269 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 TRAPPC2P0DI81 140 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 TRAPPC2BP0DI82 140 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 FOXE3Q13461 319 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 C19orf35Q6ZS72 473 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 ZNF429Q86V71 674 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 OR5B3Q8NH48 314 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 COQ8AQ8NI60 647 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 MITD1Q8WV92 249 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 MS4A10Q96PG2 267 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 MARVELD1Q9BSK0 173 aa17.3■□□□□ 0.36
SHMT1-203ENST00000354098 TET2Q6N021 2002 aaPredicted RBP17.3■□□□□ 0.36
SHMT1-203ENST00000354098 IGLC7A0M8Q6 106 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 ADAP1O75689 374 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 REG1AP05451 166 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 PF4V1P10720 104 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 SPINK9Q5DT21 86 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 COMMD1Q8N668 190 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 OR5M8Q8NGP6 311 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 ZNF257Q9Y2Q1 563 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 DUXBA0A1W2PPF3 345 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 TCRBV4S1A1TA0A5B7 111 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 PTTG1O95997 202 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 ELANEP08246 267 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 HSPE1P61604 102 aaKnown RBP17.29■□□□□ 0.36
SHMT1-203ENST00000354098 TTC9CQ8N5M4 171 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 RNF152Q8N8N0 203 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 FAM110DQ8TAY7 271 aaPredicted RBP17.29■□□□□ 0.36
SHMT1-203ENST00000354098 ZNF431Q8TF32 576 aaPredicted RBP17.29■□□□□ 0.36
SHMT1-203ENST00000354098 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.29■□□□□ 0.36
SHMT1-203ENST00000354098 ZNF355PQ9NSJ1 428 aa17.29■□□□□ 0.36
SHMT1-203ENST00000354098 PRH1P02810 166 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 IL5P05113 134 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 RAB9AP51151 201 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 WT1-ASQ06250 92 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 GGNBP1Q5YKI7 109 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 COA4Q9NYJ1 87 aa17.28■□□□□ 0.36
SHMT1-203ENST00000354098 A0A1W2PRX2 142 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 NXPH3O95157 252 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 SULT1A3P0DMM9 295 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 SULT1A4P0DMN0 295 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 CXorf66Q5JRM2 361 aaPredicted RBP17.27■□□□□ 0.36
SHMT1-203ENST00000354098 KHDC1LQ5JSQ8 128 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 TMEM65Q6PI78 240 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 TMED3Q9Y3Q3 217 aa17.27■□□□□ 0.36
SHMT1-203ENST00000354098 PIGBOS1A0A0B4J2F0 54 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 ADARB2-AS1A8MUL3 147 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 MPTX1A8MV57 137 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 IFNA17P01571 189 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 OR13C7P0DN81 318 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 PSMB6P28072 239 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 PRCDQ00LT1 54 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 KIAA0141Q14154 515 aaPredicted RBP17.26■□□□□ 0.35
SHMT1-203ENST00000354098 SMCO1Q147U7 214 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 AARDQ4LEZ3 155 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 C18orf65Q6ZTR6 163 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 ANK2Q01484 3957 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 NPIPB5A8MRT5 1133 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 CTRB1P17538 263 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 DEFA5Q01523 94 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 NSUN5P1Q3KNT7 163 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 CTRB2Q6GPI1 263 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 UXS1Q8NBZ7 420 aa17.26■□□□□ 0.35
SHMT1-203ENST00000354098 SRSF8Q9BRL6 282 aaKnown RBP17.26■□□□□ 0.35
SHMT1-203ENST00000354098 TSSC4Q9Y5U2 329 aaPredicted RBP17.26■□□□□ 0.35
SHMT1-203ENST00000354098 A0A1B0GU03 582 aa17.25■□□□□ 0.35
SHMT1-203ENST00000354098 CRYGCP07315 174 aa17.25■□□□□ 0.35
SHMT1-203ENST00000354098 THOC7Q6I9Y2 204 aaKnown RBP17.25■□□□□ 0.35
SHMT1-203ENST00000354098 C12orf45Q8N5I9 185 aaPredicted RBP17.25■□□□□ 0.35
SHMT1-203ENST00000354098 MYOZ3Q8TDC0 251 aa17.25■□□□□ 0.35
SHMT1-203ENST00000354098 PDCD10Q9BUL8 212 aa17.25■□□□□ 0.35
SHMT1-203ENST00000354098 TRGV3P03979 118 aa17.24■□□□□ 0.35
SHMT1-203ENST00000354098 TPPP2P59282 170 aa17.24■□□□□ 0.35
SHMT1-203ENST00000354098 RPL23AP62750 156 aaKnown RBP17.24■□□□□ 0.35
SHMT1-203ENST00000354098 RGS21Q2M5E4 152 aa17.24■□□□□ 0.35
SHMT1-203ENST00000354098 PITX3O75364 302 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 DHFRP00374 187 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 NDUFA11Q86Y39 141 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 ZNF491Q8N8L2 437 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 OR1S1Q8NH92 325 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 PLEKHA3Q9HB20 300 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 H3BUA1 57 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 PRAF2O60831 178 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 SPCS3P61009 180 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 HSD17B13Q7Z5P4 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-203ENST00000354098 OR52E5Q8NH55 327 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 FANCD2OSQ96PS1 177 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 SLA2Q9H6Q3 261 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 GPN1Q9HCN4 374 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-203ENST00000354098 ZFP57Q9NU63 452 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 DMRT1Q9Y5R6 373 aa17.23■□□□□ 0.35
SHMT1-203ENST00000354098 CCSO14618 274 aa17.22■□□□□ 0.35
SHMT1-203ENST00000354098 BRI3O95415 125 aa17.22■□□□□ 0.35
SHMT1-203ENST00000354098 IFNA21P01568 189 aa17.22■□□□□ 0.35
SHMT1-203ENST00000354098 SLC25A6P12236 298 aa17.22■□□□□ 0.35
SHMT1-203ENST00000354098 OR10C1Q96KK4 312 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms