RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CA2P00918 260 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 UCP1P25874 307 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 FGL1Q08830 312 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 MIDNQ504T8 468 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 LINC00311Q8N616 119 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 PPP1R1CQ8WVI7 109 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 AJUBAQ96IF1 538 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 MS4A10Q96PG2 267 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 RASL11BQ9BPW5 248 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 SMIM3Q9BZL3 60 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 FBN1P35555 2871 aaKnown RBP7.36□□□□□ -1.23
USP4-202ENST00000351842 A0A0D9SG52 128 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 LY6LH3BQJ8 138 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 HRASP01112 189 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 RAB32Q13637 225 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 VMA21Q3ZAQ7 101 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 MINOS1Q5TGZ0 78 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 OR5B12Q96R08 314 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 MLXQ9UH92 298 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 TNFSF18Q9UNG2 199 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 POLR3KQ9Y2Y1 108 aaPredicted RBP7.35□□□□□ -1.23
USP4-202ENST00000351842 MINOS1-NBL1R4GNA1 71 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 VWFP04275 2813 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 G3V318 75 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 CHST1O43916 411 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 VDAC1P21796 283 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 MC5RP33032 325 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 UBA52P62987 128 aaKnown RBP7.35□□□□□ -1.23
USP4-202ENST00000351842 SPANXN5Q5MJ07 72 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 STPG2Q8N412 459 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 ZBTB34Q8NCN2 500 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 LFNGQ8NES3 379 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 SVIPQ8NHG7 77 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 CFHR4Q92496 578 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 ADTRPQ96IZ2 230 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 HEYLQ9NQ87 328 aaPredicted RBP7.35□□□□□ -1.23
USP4-202ENST00000351842 COMMD9Q9P000 198 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 NBR2O15453 112 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 OR2F1Q13607 317 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 PSG5Q15238 335 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 TMEM30BQ3MIR4 351 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 DDB2Q92466 427 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 CXorf58Q96LI9 332 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 HSPB9Q9BQS6 159 aa7.35□□□□□ -1.23
USP4-202ENST00000351842 TBL2Q9Y4P3 447 aaKnown RBP7.35□□□□□ -1.23
USP4-202ENST00000351842 A0A0B4J2A0 478 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 MSGN1A6NI15 193 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 CST7O76096 145 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 IGHV3-23P01764 117 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 OR8G2PQ6IF36 304 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 SLC16A13Q7RTY0 426 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 PPP1R27Q86WC6 154 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 PDPNQ86YL7 162 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 UBAC2Q8NBM4 344 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 CD300LFQ8TDQ1 290 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 SSMEM1Q8WWF3 244 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 ESM1Q9NQ30 184 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 SHPKQ9UHJ6 478 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 IGHV3-35A0A0C4DH35 117 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 POM121CA8CG34 1229 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 ARPC5O15511 151 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 ST8SIA3O43173 380 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 IFNA10P01566 189 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 OR13C7P0DN81 318 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 LYL1P12980 280 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 NKX2-1P43699 371 aaPredicted RBP7.34□□□□□ -1.23
USP4-202ENST00000351842 RPL8P62917 257 aaKnown RBP7.34□□□□□ -1.23
USP4-202ENST00000351842 TMEM267Q0VDI3 215 aaPredicted RBP7.34□□□□□ -1.23
USP4-202ENST00000351842 FXYD3Q14802 87 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 C10orf99Q6UWK7 81 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.34□□□□□ -1.23
USP4-202ENST00000351842 GALNT14Q96FL9 552 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 NIT2Q9NQR4 276 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 CBY1Q9Y3M2 126 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 OR51B2Q9Y5P1 312 aa7.34□□□□□ -1.23
USP4-202ENST00000351842 DNAJC9-AS1A6NH13 148 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 DEFA4P12838 97 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 RND3P61587 244 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 NDPQ00604 133 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 PLEKHA2Q9HB19 425 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 CDC42EP3Q9UKI2 254 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 SELENOKQ9Y6D0 94 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 NOTCH1P46531 2555 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 RRHO14718 337 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 CRYBA1P05813 215 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 AREGP15514 252 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 CX3CL1P78423 397 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 EIF4EBP1Q13541 118 aaPredicted RBP7.33□□□□□ -1.24
USP4-202ENST00000351842 PIFOQ8TCI5 191 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 DCUN1D4Q92564 292 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 TSNAXQ99598 290 aaKnown RBP7.33□□□□□ -1.24
USP4-202ENST00000351842 ENY2Q9NPA8 101 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 BIN3Q9NQY0 253 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 A0A1B0GV90 55 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 SMCO3A2RU48 225 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 SNCAP37840 140 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 VAMP2P63027 116 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 MSMO1Q15800 293 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 STOML3Q8TAV4 291 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 ZNF418Q8TF45 676 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms