RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OPRK1P41145 380 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 ATP5G3P48201 142 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 RPL31P62899 125 aaKnown RBP15.84■□□□□ 0.13
COL9A3-201ENST00000343916 CST9LP1Q5W188 147 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 CORO2AQ92828 525 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 HIST1H2BLQ99880 126 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 LINC00574Q9H8X3 128 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 MPDU1O75352 247 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 OR5T1Q8NG75 326 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 OR51B2Q9Y5P1 312 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 LINC00312Q9Y6C7 94 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 FAM122AQ96E09 287 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 NEIL1Q96FI4 390 aaPredicted RBP15.83■□□□□ 0.12
COL9A3-201ENST00000343916 ADTRPQ96IZ2 230 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 ENY2Q9NPA8 101 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 SLC35D1Q9NTN3 355 aa15.83■□□□□ 0.12
COL9A3-201ENST00000343916 NKX6-3A6NJ46 265 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 HRASP01112 189 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 ARL14EPLP0DKL9 152 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 CLEC12BQ2HXU8 276 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 TMEM204Q9BSN7 226 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 NPVFQ9HCQ7 196 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 LSM4Q9Y4Z0 139 aaKnown RBP15.82■□□□□ 0.12
COL9A3-201ENST00000343916 PTPRQQ9UMZ3 2332 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 A0A1B0GV90 55 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 NEUROG1Q92886 237 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 WFIKKN1Q96NZ8 548 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 DERL1Q9BUN8 251 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 CTDSP1Q9GZU7 261 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 AURKAIP1Q9NWT8 199 aaPredicted RBP15.82■□□□□ 0.12
COL9A3-201ENST00000343916 JKAMPQ9P055 326 aa15.82■□□□□ 0.12
COL9A3-201ENST00000343916 TRBV24-1A0A075B6N3 115 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 J3QR06 171 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 REG1BP48304 166 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 LYPD2Q6UXB3 125 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 OR4X1Q8NH49 305 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 RAB1CQ92928 201 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 ELOVL1Q9BW60 279 aa15.81■□□□□ 0.12
COL9A3-201ENST00000343916 DDTP30046 118 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 TBR1Q16650 682 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 MOB3BQ86TA1 216 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 H1FXQ92522 213 aaKnown RBP15.8■□□□□ 0.12
COL9A3-201ENST00000343916 SCNM1Q9BWG6 230 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 SEPSECSQ9HD40 501 aaKnown RBP15.8■□□□□ 0.12
COL9A3-201ENST00000343916 SOX15O60248 233 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 RNF224P0DH78 156 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 GNB1P62873 340 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 RTL8BQ17RB0 113 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 TMEM200BQ69YZ2 307 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 OR10A7Q8NGE5 316 aa15.8■□□□□ 0.12
COL9A3-201ENST00000343916 MRPL20Q9BYC9 149 aaKnown RBP15.8■□□□□ 0.12
COL9A3-201ENST00000343916 PPIAL4EA0A075B759 164 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 PPIAL4DF5H284 164 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 TMEM178BH3BS89 294 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 IL6RP08887 468 aaPredicted RBP15.79■□□□□ 0.12
COL9A3-201ENST00000343916 PPIAL4FP0DN26 164 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 PKIAP61925 76 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 POU2AF1Q16633 256 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 TEPPQ6URK8 271 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 STPG3Q8N7X2 389 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 ZNF714Q96N38 554 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 PPIAL4AQ9Y536 164 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 A0A087X0M5 115 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 A0A1B0GX30 115 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 NDUFB4O95168 129 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 SAA1P0DJI8 122 aaPredicted RBP15.79■□□□□ 0.12
COL9A3-201ENST00000343916 SPATA31B1PQ5VZV4 182 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 GAL3ST2Q9H3Q3 398 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 PITPNC1Q9UKF7 332 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 ZNF835Q9Y2P0 537 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 SPTA1P02549 2419 aa15.79■□□□□ 0.12
COL9A3-201ENST00000343916 TSTD3H0UI37 97 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 H7BYZ3 331 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 UPK2O00526 184 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 PFN1P07737 140 aaKnown RBP15.78■□□□□ 0.12
COL9A3-201ENST00000343916 IGFBP2P18065 325 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 DIAPH2-AS1Q14236 149 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 PLEKHA3Q9HB20 300 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 PRNDQ9UKY0 176 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 PGPEP1LA6NFU8 196 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 TGOLN2O43493 480 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 FAM87AP0C7U9 286 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 STAG3L2P0CL84 134 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 STAG3L3P0CL85 134 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 TMEM106BQ9NUM4 274 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 SSUH2Q9Y2M2 353 aa15.78■□□□□ 0.12
COL9A3-201ENST00000343916 GALR1P47211 349 aa15.77■□□□□ 0.12
COL9A3-201ENST00000343916 EFNB3Q15768 340 aa15.77■□□□□ 0.12
COL9A3-201ENST00000343916 REC114Q7Z4M0 266 aa15.77■□□□□ 0.12
COL9A3-201ENST00000343916 TMEM183AQ8IXX5 376 aa15.77■□□□□ 0.12
COL9A3-201ENST00000343916 OR10W1Q8NGF6 305 aa15.77■□□□□ 0.12
COL9A3-201ENST00000343916 TEX50A0A1B0GTY4 177 aa15.77■□□□□ 0.11
COL9A3-201ENST00000343916 PRCDQ00LT1 54 aa15.77■□□□□ 0.11
COL9A3-201ENST00000343916 ZNF833PQ6ZTB9 187 aa15.77■□□□□ 0.11
COL9A3-201ENST00000343916 RNASE6Q93091 150 aaKnown RBP15.77■□□□□ 0.11
COL9A3-201ENST00000343916 CTSZQ9UBR2 303 aa15.77■□□□□ 0.11
COL9A3-201ENST00000343916 MLANAQ16655 118 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 HARBI1Q96MB7 349 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 SRD5A3Q9H8P0 318 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 SHISA9B4DS77 424 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms