RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 HIST1H2BMQ99879 126 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 UTP20O75691 2785 aaKnown RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TRAV25A0A0B4J276 109 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HBZP02008 142 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CXCL10P02778 98 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR10J5Q8NHC4 309 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CACNG8Q8WXS5 425 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TSPAN32Q96QS1 320 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PLA2G2EQ9NZK7 142 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CRYBB3P26998 211 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PRSS41Q7RTY9 318 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR8A1Q8NGG7 326 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 MUCL1Q96DR8 90 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 POM121L2Q96KW2 1035 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 RNF126Q9BV68 326 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HDGFL3Q9Y3E1 203 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 RUNX1Q01196 453 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PPP1R1AQ13522 171 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 Q6AWC8 147 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SLC48A1Q6P1K1 146 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 M0QXV9 152 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CEACAM5P06731 702 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TBPL1P62380 186 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 KLF17Q5JT82 389 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR4A5Q8NH83 315 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PELI1Q96FA3 418 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 DUSP15Q9H1R2 295 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 F8W1H4 67 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 EREGO14944 169 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SRSF10O75494 262 aaKnown RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TNFP01375 233 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HRH1P35367 487 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HMGN4O00479 90 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ZFP36L2P47974 494 aaKnown RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TMEM33P57088 247 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PHPT1Q9NRX4 125 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TMPRSS2O15393 492 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 KBTBD11O94819 623 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR9G4Q8NGQ1 327 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HIST1H2BAQ96A08 127 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ABCA2Q9BZC7 2435 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TNFRSF1AP19438 455 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ATP5L2Q7Z4Y8 100 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TMEM170AQ8WVE7 144 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 IGHV3-64A0A075B6Q5 118 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CDC42EP2O14613 210 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 UCNP55089 124 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ZP4Q12836 540 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 FBXW9Q5XUX1 488 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ZNF788Q6ZQV5 615 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR10AD1Q8NGE0 317 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 KBTBD11-OT1A0A1B0GTJ5 212 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HYAL1Q12794 435 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 Q6ZRG5 221 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OR8B2Q96RD0 313 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 FAM110AQ9BQ89 295 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ATP6V0CP27449 155 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 NT5CQ8TCD5 201 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 WDR13Q9H1Z4 485 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 THYN1Q9P016 225 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 DOPEY1Q5JWR5 2465 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 COL16A1Q07092 1604 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TRAV8-2A0A0B4J237 113 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ORM1P02763 201 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ST3GAL6Q9Y274 331 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 AADACL3Q5VUY0 350 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 ABHD12Q8N2K0 398 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 OTOSQ8NHW6 89 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SSMEM1Q8WWF3 244 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 TAF15Q92804 592 aaKnown RBP eCLIP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SFT2D2O95562 160 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 HMGN2P05204 90 aaKnown RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SLC39A5Q6ZMH5 540 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SPATA12Q7Z6I5 190 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 MOB3BQ86TA1 216 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 IMUPQ9GZP8 106 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SONP18583 2426 aaKnown RBP3.03□□□□□ -1.92
SYNE1-201ENST00000341594 SELLP14151 372 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 VN1R3Q9BXE9 311 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 PRSS50Q9UI38 385 aa3.03□□□□□ -1.92
SYNE1-201ENST00000341594 CD300EQ496F6 205 aaPredicted RBP3.03□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF502Q8TBZ5 544 aa3.03□□□□□ -1.93
SYNE1-201ENST00000341594 KLF7O75840 302 aaPredicted RBP3.03□□□□□ -1.93
SYNE1-201ENST00000341594 CHD8Q9HCK8 2581 aa3.03□□□□□ -1.93
SYNE1-201ENST00000341594 RBFOX2O43251 390 aaKnown RBP eCLIP3.02□□□□□ -1.93
SYNE1-201ENST00000341594 FCN3O75636 299 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 H0YGG7 62 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 Q6ZSR6 202 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 TRAV8-4A0A0B4J246 113 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 RAE1P78406 368 aaKnown RBP3.02□□□□□ -1.93
SYNE1-201ENST00000341594 U3KQE9 123 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 DKK1O94907 266 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 BCL2P10415 239 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 NKX2-1P43699 371 aaPredicted RBP3.02□□□□□ -1.93
SYNE1-201ENST00000341594 H2BFSP57053 126 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 GAGE13Q4V321 117 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 SSC4DQ8WTU2 575 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF625Q96I27 306 aaPredicted RBP3.02□□□□□ -1.93
SYNE1-201ENST00000341594 THBDP07204 575 aa3.02□□□□□ -1.93
SYNE1-201ENST00000341594 LOXL3P58215 753 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms