RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SLC16A13Q7RTY0 426 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 RTBDNQ9BSG5 229 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 GBF1Q92538 1859 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 C5orf63A6NC05 138 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 LINC00862A6NCI5 91 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 TOX4O94842 621 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 F12P00748 615 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ORM2P19652 201 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF660Q6AZW8 331 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 OR4A47Q6IF82 309 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 Q6P435 159 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 LYPD6Q86Y78 171 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 LINC00311Q8N616 119 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 SSMEM1Q8WWF3 244 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 SLC25A22Q9H936 323 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 WDR83OSQ9Y284 106 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 RBFOX3A6NFN3 312 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 A6NNC1 897 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 UPK2O00526 184 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 CXorf1O96002 111 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 HKR1P10072 659 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF273Q14593 569 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF324BQ6AW86 544 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 SLC25A48Q6ZT89 311 aaKnown RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 GNB4Q9HAV0 340 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 TRANK1O15050 2925 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 IGKV1D-17A0A075B6S4 117 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 A0A1B0GV90 55 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 BCL2P10415 239 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 BTN1A1Q13410 526 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 ECSCRQ19T08 205 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 CTDSP1Q9GZU7 261 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 DNAJC4Q9NNZ3 241 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 CRIM1Q9NZV1 1036 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 IGKV1D-8A0A087WSZ0 117 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 S100A4P26447 101 aaKnown RBP5.69□□□□□ -1.5
SF3B1-201ENST00000335508 MARVELD3Q96A59 401 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 TLNRD1Q9H1K6 362 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 IFI27L2Q9H2X8 130 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 C21orf62Q9NYP8 219 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 C20orf202A1L168 122 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 ARG1P05089 322 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 C10orf113Q5VZT2 155 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 TVP23CQ96ET8 276 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 MRPL32Q9BYC8 188 aaKnown RBP5.69□□□□□ -1.5
SF3B1-201ENST00000335508 HIF1ANQ9NWT6 349 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 ANAPC10Q9UM13 185 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 TBL2Q9Y4P3 447 aaKnown RBP5.69□□□□□ -1.5
SF3B1-201ENST00000335508 HELZP42694 1942 aaKnown RBP5.69□□□□□ -1.5
SF3B1-201ENST00000335508 PDE6DO43924 150 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 BTCP35070 178 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 PRCDQ00LT1 54 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 NHLH2Q02577 135 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF90Q03938 601 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 TEX36Q5VZQ5 186 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 PXMP4Q9Y6I8 212 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 LYZP61626 148 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 CD300CQ08708 224 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 RPL39P5Q59GN2 51 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 CEP350Q5VT06 3117 aa5.69□□□□□ -1.5
SF3B1-201ENST00000335508 SELLP14151 372 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 NMSQ5H8A3 153 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 FBXL15Q9H469 300 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 RPRMQ9NS64 109 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 OR5AC2Q9NZP5 309 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 HELTA6NFD8 242 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 STAG3L2P0CL84 134 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 PSG5Q15238 335 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 LRRC75BQ2VPJ9 315 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM177Q53S58 311 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 DMRTC2Q8IXT2 367 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 NPIPB3Q92617 1050 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 MRPL20Q9BYC9 149 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 SAA2-SAA4A0A096LPE2 208 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 C15orf61A6NNL5 157 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 SAA2P0DJI9 122 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 TDGF1P3P51864 188 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 Q8NA96 180 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 PRSS22Q9GZN4 317 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 C11orf94C9JXX5 98 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 HSPB1P04792 205 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 HIST1H1EP10412 219 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 MGST1P10620 155 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 CD69Q07108 199 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 LAMTOR1Q6IAA8 161 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 SRSF8Q9BRL6 282 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 TEP1Q99973 2627 aaKnown RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 UNC79Q9P2D8 2635 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 MED19A0JLT2 244 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-201ENST00000335508 HCP5Q6MZN7 132 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 CD177Q8N6Q3 437 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 C2CD4CQ8TF44 421 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 PRR13Q9NZ81 148 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 HIGD1AQ9Y241 93 aa5.68□□□□□ -1.5
SF3B1-201ENST00000335508 SUMO1P63165 101 aaKnown RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 RELQ04864 619 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 BEND2Q8NDZ0 799 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 RBKSQ9H477 322 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 A0A0A6YYD4 124 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 SERTM2A0A1B0GWG4 89 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 326.1 ms