RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TRGV3P03979 118 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 FOXG1P55316 489 aaPredicted RBP8.59□□□□□ -1.03
CHD3-201ENST00000330494 CX3CL1P78423 397 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 LINC00305Q7Z4B0 112 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 A0A0B4J293 547 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 TMEM177Q53S58 311 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 LINC00114Q6XXX2 140 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 TMEM136Q6ZRR5 245 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 ALKBH7Q9BT30 221 aaPredicted RBP8.59□□□□□ -1.03
CHD3-201ENST00000330494 TRGC1P0CF51 173 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 TFF3Q07654 80 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 GOLT1AQ6ZVE7 132 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 OR1N2Q8NGR9 330 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 ZNF502Q8TBZ5 544 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 SRSF12Q8WXF0 261 aaKnown RBP8.59□□□□□ -1.03
CHD3-201ENST00000330494 PLXNA3P51805 1871 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 FOXH1O75593 365 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 ZFP36L1Q07352 338 aaKnown RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 STPG3Q8N7X2 389 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 TMEM186Q96B77 213 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 FOXA2Q9Y261 457 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 GVINP1Q7Z2Y8 2422 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 A0A0G2JK05 382 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 NPIPB11E5RHQ5 1161 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 UBE2L6O14933 153 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 KLF7O75840 302 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 PF4P02776 101 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 MAS1LP35410 378 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 LSM10Q969L4 123 aaKnown RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 C1QTNF5Q9BXJ0 243 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 LOC390937A0A1W2PQ73 354 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 FOXI3A8MTJ6 420 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 CD74P04233 296 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 CKS2P33552 79 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 RIPPLY3P57055 190 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 RELBQ01201 579 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 HIST1H2BAQ96A08 127 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 MRPL20Q9BYC9 149 aaKnown RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 A0A1W2PS18 150 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 PRR32B1ATL7 298 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 IFNL4K9M1U5 179 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 COL25A1Q9BXS0 654 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 PHLDA3Q9Y5J5 127 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 FAM181BA6NEQ2 426 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 MEF2BQ02080 365 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 RELQ04864 619 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 SLC25A34Q6PIV7 304 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 EP300Q09472 2414 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 GATA2P23769 480 aaPredicted RBP8.58□□□□□ -1.04
CHD3-201ENST00000330494 NABP2Q9BQ15 211 aa8.58□□□□□ -1.04
CHD3-201ENST00000330494 RPS11P62280 158 aaKnown RBP eCLIP8.57□□□□□ -1.04
CHD3-201ENST00000330494 ADIPOQQ15848 244 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 FAM106AQ4KMX7 169 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 C11orf44Q8N8P7 122 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 DDB2Q92466 427 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 HIST1H4GQ99525 98 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 SDHCQ99643 169 aaPredicted RBP8.57□□□□□ -1.04
CHD3-201ENST00000330494 C7orf69Q9H7B7 122 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 NEUROG3Q9Y4Z2 214 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 IGHV3-11P01762 117 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 GPX1P07203 203 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 PMCHL1Q16048 86 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 EEF1AKMT3Q96AZ1 226 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 ZNF319Q9P2F9 582 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 DIDO1Q9BTC0 2240 aaKnown RBP8.57□□□□□ -1.04
CHD3-201ENST00000330494 TGFAP01135 160 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 ZP1P60852 638 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 RND3P61587 244 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 LHFPL4Q7Z7J7 247 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 OR51G1Q8NGK1 321 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 OR10S1Q8NGN2 331 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 DMRTA2Q96SC8 542 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 ZNF146Q15072 292 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 POC1AQ8NBT0 407 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 PLPPR1Q8TBJ4 325 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 NPIPB13A6NJU9 1138 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 NPIPB4C9JG80 1138 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 KBTBD11O94819 623 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 IGFBP2P18065 325 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 ANOS1P23352 680 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 AQP10Q96PS8 301 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 MRPL18Q9H0U6 180 aaKnown RBP8.57□□□□□ -1.04
CHD3-201ENST00000330494 A8MWL6 223 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 NUDT3O95989 172 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 C8orf88P0DMB2 117 aa8.57□□□□□ -1.04
CHD3-201ENST00000330494 IGLV3-12A0A075B6K2 115 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 GRIFINA4D1Z8 144 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 HIST1H1AQ02539 215 aaPredicted RBP8.56□□□□□ -1.04
CHD3-201ENST00000330494 MBNL2Q5VZF2 373 aaKnown RBP8.56□□□□□ -1.04
CHD3-201ENST00000330494 CLEC19AQ6UXS0 136 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 ANAPC1Q9H1A4 1944 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 IGHV1-18A0A0C4DH31 117 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 TMEM238LA0A1B0GVL6 79 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 MSGN1A6NI15 193 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 A6NJY4 79 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 MPDU1O75352 247 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 NPPCP23582 126 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 GPR183P32249 361 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 FAM53AQ6NSI3 398 aaPredicted RBP8.56□□□□□ -1.04
CHD3-201ENST00000330494 FAM169BQ8N8A8 192 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms