RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 TMEM144Q7Z5S9 345 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 FAM222BQ8WU58 562 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 TCF19Q9Y242 345 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 PXMP4Q9Y6I8 212 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 NBASA2RRP1 2371 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 KBTBD11-OT1A0A1B0GTJ5 212 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 LCN2P80188 198 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 WFIKKN1Q96NZ8 548 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 GCM1Q9NP62 436 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 DSCAML1Q8TD84 2053 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 TRGV8A0A0C4DH27 118 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 C15orf61A6NNL5 157 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 STAG3L2P0CL84 134 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 STAG3L3P0CL85 134 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 CD99P14209 185 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 RNF7Q9UBF6 113 aa13.2□□□□□ -0.3
USHBP1-202ENST00000324554 A0A0U1RQK1 487 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 A0A1B0GV90 55 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 ZNF320A2RRD8 509 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 STUMQ69YW2 141 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 SSMEM1Q8WWF3 244 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 A0A0G2JNJ9 132 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 A0A1B0GUS0 222 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 SCO2A0A1W2PP80 73 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 ZNF705GA8MUZ8 300 aaPredicted RBP13.19□□□□□ -0.3
USHBP1-202ENST00000324554 F6UZH7 168 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 PRRG2O14669 202 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 TIMP3P35625 211 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 CNN1P51911 297 aaKnown RBP13.19□□□□□ -0.3
USHBP1-202ENST00000324554 OR4A47Q6IF82 309 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.19□□□□□ -0.3
USHBP1-202ENST00000324554 SFRP2Q96HF1 295 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 RAB9BQ9NP90 201 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 Q9UFV3 132 aa13.19□□□□□ -0.3
USHBP1-202ENST00000324554 PIEZO1Q92508 2521 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 A8MWP6 167 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 IGHV1-46P01743 117 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 HNF1AP20823 631 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 LSM4Q9Y4Z0 139 aaKnown RBP13.18□□□□□ -0.3
USHBP1-202ENST00000324554 YTHDF2Q9Y5A9 579 aaKnown RBP13.18□□□□□ -0.3
USHBP1-202ENST00000324554 TRGV10A0A0A0MS01 117 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 GCGP01275 180 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 TNFAIP6P98066 277 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-202ENST00000324554 ARSJQ5FYB0 599 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-202ENST00000324554 LYG1Q8N1E2 194 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 ZNF439Q8NDP4 499 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 SGMS2Q8NHU3 365 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 GAFA1Q96PS6 74 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 IL19Q9UHD0 177 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 TRAPPC1Q9Y5R8 145 aa13.18□□□□□ -0.3
USHBP1-202ENST00000324554 CXorf1O96002 111 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 CEACAM8P31997 349 aaPredicted RBP13.17□□□□□ -0.3
USHBP1-202ENST00000324554 THBS3P49746 956 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 FOXL1Q12952 345 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 SPATA31B1PQ5VZV4 182 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 GBGT1Q8N5D6 347 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 DEFB108BQ8NET1 73 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 TMEM18Q96B42 140 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 SFXN3Q9BWM7 321 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 SEPSECSQ9HD40 501 aaKnown RBP13.17□□□□□ -0.3
USHBP1-202ENST00000324554 TMEM14BQ9NUH8 114 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 FOXA2Q9Y261 457 aaPredicted RBP13.17□□□□□ -0.3
USHBP1-202ENST00000324554 PLCE1Q9P212 2302 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 TANC2Q9HCD6 1990 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 MRPS11P82912 194 aaKnown RBP13.17□□□□□ -0.3
USHBP1-202ENST00000324554 SLC24A4Q8NFF2 622 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 OCC1Q8TAD7 63 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 NPVFQ9HCQ7 196 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 ELOVL5Q9NYP7 299 aa13.17□□□□□ -0.3
USHBP1-202ENST00000324554 TPRP12270 2363 aaKnown RBP13.16□□□□□ -0.3
USHBP1-202ENST00000324554 IL6RP08887 468 aaPredicted RBP13.16□□□□□ -0.3
USHBP1-202ENST00000324554 SELENOVP59797 346 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 HSPE1P61604 102 aaKnown RBP13.16□□□□□ -0.3
USHBP1-202ENST00000324554 MRPL41Q8IXM3 137 aaKnown RBP13.16□□□□□ -0.3
USHBP1-202ENST00000324554 TMEM256Q8N2U0 113 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 FAM216BQ8N7L0 139 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 IMMP2LQ96T52 175 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 CCL13Q99616 98 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 IDI2-AS1Q9NZ38 188 aa13.16□□□□□ -0.3
USHBP1-202ENST00000324554 RAI1Q7Z5J4 1906 aaPredicted RBP13.16□□□□□ -0.3
USHBP1-202ENST00000324554 NUPR1O60356 82 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 MYOD1P15172 320 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 NPY1RP25929 384 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 EFNB3Q15768 340 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 SSX2Q16385 188 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 A8MXE2 369 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 FOXH1O75593 365 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 MMP23AO75900 390 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 SNRPCP09234 159 aaKnown RBP13.15□□□□□ -0.3
USHBP1-202ENST00000324554 OR4A8P0C604 315 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 RNF224P0DH78 156 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 CD40P25942 277 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 GNG10P50151 68 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 ROS1P08922 2347 aa13.15□□□□□ -0.3
USHBP1-202ENST00000324554 MDFIC2A0A1B0GVS7 189 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 GCHFRP30047 84 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 TEX38Q6PEX7 206 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 ZNF788Q6ZQV5 615 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 STPG3Q8N7X2 389 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms