RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 PPBPP02775 128 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 EFNB2P52799 333 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 OSR1Q8TAX0 266 aaPredicted RBP13.25□□□□□ -0.29
HCFC1-201ENST00000310441 FGF11Q92914 225 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 GP6Q9HCN6 339 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 FOXI3A8MTJ6 420 aaPredicted RBP13.25□□□□□ -0.29
HCFC1-201ENST00000310441 GCHFRP30047 84 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 MS4A6AQ9H2W1 248 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 C5orf66Q9H5L9 145 aa13.25□□□□□ -0.29
HCFC1-201ENST00000310441 PGPEP1LA6NFU8 196 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 PAX2Q02962 417 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 UNC119Q13432 240 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 C8orf82Q6P1X6 216 aaPredicted RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 C16orf47Q6ZP98 133 aaPredicted RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 TRBV5-3A0A0A0MS03 114 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 CD300CQ08708 224 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 SRSF6Q13247 344 aaKnown RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 NHLRC3Q5JS37 347 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 CENPVQ7Z7K6 275 aaPredicted RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 RTN4RL2Q86UN3 420 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 LINC00518Q8N0U6 118 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 PEMTQ9UBM1 199 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 TCF19Q9Y242 345 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 OTX1P32242 354 aaPredicted RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 SIGLEC14Q08ET2 396 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 ASCL2Q99929 193 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 RPP21Q9H633 154 aaKnown RBP13.24□□□□□ -0.29
HCFC1-201ENST00000310441 SLC25A15Q9Y619 301 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 CYP2G1PQ6ZSU1 146 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 DUX3Q96PT4 197 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 IGKV3OR2-268A0A0C4DH90 116 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 NPCDR1Q9BY65 106 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 OR10J3Q5JRS4 329 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 LILRA6Q6PI73 481 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 APCDD1LQ8NCL9 501 aa13.24□□□□□ -0.29
HCFC1-201ENST00000310441 HOXB3P14651 431 aaPredicted RBP13.23□□□□□ -0.29
HCFC1-201ENST00000310441 P2RY4P51582 365 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 ABHD12Q8N2K0 398 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 Q96M66 194 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 TDGF1P13385 188 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 CBLN1P23435 193 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 NANOS3P60323 173 aaKnown RBP13.23□□□□□ -0.29
HCFC1-201ENST00000310441 ORMDL2Q53FV1 153 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 OR11H4Q8NGC9 324 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 NXT2Q9NPJ8 142 aaKnown RBP13.23□□□□□ -0.29
HCFC1-201ENST00000310441 ZSWIM8A7E2V4 1837 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 PLAUP00749 431 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 C1QL3Q5VWW1 255 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 TMEM92Q6UXU6 159 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 KBTBD11-OT1A0A1B0GTJ5 212 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 H0YL77 283 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 HLA-DQB1P01920 261 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 TMEM42Q69YG0 159 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 WNK1Q9H4A3 2382 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 IGHV1-45A0A0A0MS14 117 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 DMRTA2Q96SC8 542 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 FRMPD3Q5JV73 1810 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 MGAMO43451 1857 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 C1orf53Q5VUE5 145 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 PLXNB3Q9ULL4 1909 aa13.23□□□□□ -0.29
HCFC1-201ENST00000310441 ATP5J2P56134 94 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 DCAF12L2Q5VW00 463 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 FAM90A1Q86YD7 464 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 TMEM106BQ9NUM4 274 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 LIMS1P48059 325 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 CD69Q07108 199 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 FOXC2Q99958 501 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 A0A1W2PPE3 182 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 NPFFR1Q9GZQ6 430 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 LGALS1P09382 135 aaKnown RBP13.22□□□□□ -0.29
HCFC1-201ENST00000310441 LIMS2Q7Z4I7 341 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 CHODLQ9H9P2 273 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 CYSLTR1Q9Y271 337 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 OR4D11Q8NGI4 311 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 DMRTA1Q5VZB9 504 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 TLNRD1Q9H1K6 362 aa13.22□□□□□ -0.29
HCFC1-201ENST00000310441 APOHP02749 345 aaPredicted RBP13.21□□□□□ -0.29
HCFC1-201ENST00000310441 APOMO95445 188 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 TCF20Q9UGU0 1960 aaKnown RBP13.21□□□□□ -0.29
HCFC1-201ENST00000310441 DLL3Q9NYJ7 618 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 IZUMO1RA6ND01 250 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 NBEAP1P0C6P0 100 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 ATOH7Q8N100 152 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 KCNK17Q96T54 332 aa13.21□□□□□ -0.29
HCFC1-201ENST00000310441 GRIFINA4D1Z8 144 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 UPK3AO75631 287 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 C3AR1Q16581 482 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 MORN3Q6PF18 240 aaPredicted RBP13.21□□□□□ -0.3
HCFC1-201ENST00000310441 SCARF2Q96GP6 870 aaPredicted RBP13.21□□□□□ -0.3
HCFC1-201ENST00000310441 HCFC1P51610 2035 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 M0R381 172 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 SRSF1Q07955 248 aaKnown RBP eCLIP13.21□□□□□ -0.3
HCFC1-201ENST00000310441 ITLN1Q8WWA0 313 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 TRAV8-4A0A0B4J246 113 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 WDYHV1Q96HA8 205 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 SIGMAR1Q99720 223 aa13.21□□□□□ -0.3
HCFC1-201ENST00000310441 RPRMQ9NS64 109 aa13.2□□□□□ -0.3
HCFC1-201ENST00000310441 CREBBPQ92793 2442 aa13.2□□□□□ -0.3
HCFC1-201ENST00000310441 LEPP41159 167 aa13.2□□□□□ -0.3
HCFC1-201ENST00000310441 SLC25A47Q6Q0C1 308 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms