RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 OPN1MW3P0DN78 364 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 CDKN1AP38936 164 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 ERVFRD-1P60508 538 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 KIAA0141Q14154 515 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-201ENST00000292476 OR10G9Q8NGN4 311 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 OR10G7Q8NGN6 311 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 TMPRSS5Q9H3S3 457 aa13.72□□□□□ -0.21
CPSF4-201ENST00000292476 TRBV24-1A0A075B6N3 115 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 C15orf62A8K5M9 175 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 RBMXL2O75526 392 aaKnown RBP13.71□□□□□ -0.21
CPSF4-201ENST00000292476 KBTBD11O94819 623 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 RBP4P02753 201 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 HOXA5P20719 270 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 GPR6P46095 362 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-201ENST00000292476 ERVK-16P61578 105 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 CTAG1AP78358 180 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 ACOT6Q3I5F7 207 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-201ENST00000292476 FFAR4Q5NUL3 377 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 NCR3LG1Q68D85 454 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 FAM53AQ6NSI3 398 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-201ENST00000292476 C8orf31Q8N9H6 132 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 WDR83OSQ9Y284 106 aa13.71□□□□□ -0.21
CPSF4-201ENST00000292476 SPG11Q96JI7 2443 aa13.71□□□□□ -0.22
CPSF4-201ENST00000292476 PDZD2O15018 2839 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 SMCO3A2RU48 225 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 SEC14L6B5MCN3 397 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 CYB5BO43169 146 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 CXCL1P09341 107 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 NQO2P16083 231 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 CD81P60033 236 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF674Q2M3X9 581 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF841Q6ZN19 808 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 ZDHHC16Q969W1 377 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 ADTRPQ96IZ2 230 aa13.7□□□□□ -0.22
CPSF4-201ENST00000292476 PATZ1Q9HBE1 687 aaKnown RBP13.7□□□□□ -0.22
CPSF4-201ENST00000292476 SLC25A48Q6ZT89 311 aaKnown RBP13.69□□□□□ -0.22
CPSF4-201ENST00000292476 C8orf46Q8TAG6 207 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 S1PR3Q99500 378 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 CCL19Q99731 98 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 QTRT1Q9BXR0 403 aaKnown RBP13.69□□□□□ -0.22
CPSF4-201ENST00000292476 IFI27L2Q9H2X8 130 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 PROP1O75360 226 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 OR9G9P0C7N8 305 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 CDX1P47902 265 aaPredicted RBP13.69□□□□□ -0.22
CPSF4-201ENST00000292476 TMEM241Q24JQ0 296 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 CT45A1Q5HYN5 189 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 PRAMEF5Q5TYX0 476 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF343Q6P1L6 599 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF439Q8NDP4 499 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 OR4A16Q8NH70 328 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 OR4S2Q8NH73 311 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 CT45A3Q8NHU0 189 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 FAM210BQ96KR6 192 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 SMIM7Q9BQ49 75 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 SLC25A22Q9H936 323 aa13.69□□□□□ -0.22
CPSF4-201ENST00000292476 ANKRD17O75179 2603 aaKnown RBP13.68□□□□□ -0.22
CPSF4-201ENST00000292476 DSCAML1Q8TD84 2053 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 M0R1X1 148 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 FCGR3BO75015 233 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 FCN3O75636 299 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 LY6HO94772 140 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF134P52741 427 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 DDB2Q92466 427 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 RAB24Q969Q5 203 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 KCNIP2Q9NS61 270 aa13.68□□□□□ -0.22
CPSF4-201ENST00000292476 ELOA3CA0A087WX78 387 aaPredicted RBP13.67□□□□□ -0.22
CPSF4-201ENST00000292476 A0A087X0M5 115 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 TGIF2-C20orf24A0A0A6YYL0 155 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 PPIAL4CA0A0B4J2A2 164 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 A0A1B0GX30 115 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 CLN5O75503 358 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 VENTXO95231 258 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 PPIAL4GP0DN37 164 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 CCL3L1P16619 93 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 CD1BP29016 333 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 VDAC2P45880 294 aaPredicted RBP13.67□□□□□ -0.22
CPSF4-201ENST00000292476 B2MP61769 119 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 LYG1Q8N1E2 194 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 LINC00311Q8N616 119 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 IGFBPL1Q8WX77 278 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 TNFRSF14Q92956 283 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 TXNDC17Q9BRA2 123 aa13.67□□□□□ -0.22
CPSF4-201ENST00000292476 LIPFP07098 398 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 CDC34P49427 236 aaPredicted RBP13.66□□□□□ -0.22
CPSF4-201ENST00000292476 THBS3P49746 956 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 PDLIM4P50479 330 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 DLX6P56179 175 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 FAM71F2Q6NXP2 309 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 Q8N7P7 452 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 SSBP3Q9BWW4 388 aaPredicted RBP13.66□□□□□ -0.22
CPSF4-201ENST00000292476 URGCP-MRPS24S4R325 110 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 CREBBPQ92793 2442 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 MMP23AO75900 390 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 IGHV1-8P0DP01 117 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 IL3RAP26951 378 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 OPRK1P41145 380 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 RELBQ01201 579 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 LY6G5BQ8NDX9 201 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 OR9G1Q8NH87 305 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 ZNF596Q8TC21 504 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms