RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 LGALS4P56470 323 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 TUSC1Q2TAM9 212 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 TBX15Q96SF7 602 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 BET1LQ9NYM9 111 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 FAM90A9PA6NNJ1 464 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 MC5RP33032 325 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 OR11H6Q8NGC7 330 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 MARC2Q969Z3 335 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 SIRPDQ9H106 197 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 FGF7P21781 194 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 CCL20P78556 96 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 AARDQ4LEZ3 155 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 SLC24A4Q8NFF2 622 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 WDR61Q9GZS3 305 aaKnown RBP13.25□□□□□ -0.29
USP4-201ENST00000265560 UQCC1Q9NVA1 299 aa13.25□□□□□ -0.29
USP4-201ENST00000265560 SOX21Q9Y651 276 aaPredicted RBP13.25□□□□□ -0.29
USP4-201ENST00000265560 CGB1A6NKQ9 187 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 TNXAQ16473 311 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 TAF15Q92804 592 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP4-201ENST00000265560 METTL1Q9UBP6 276 aaKnown RBP13.24□□□□□ -0.29
USP4-201ENST00000265560 FGF2P09038 288 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 NPY1RP25929 384 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 PLGLAQ15195 96 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 MRGPRG-AS1Q2M3A8 158 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 LRRC75BQ2VPJ9 315 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 OR52E5Q8NH55 327 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 PRCDQ00LT1 54 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 RUSC1-AS1Q66K80 236 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 BRD3OSQ6XYD6 125 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 BPIFCQ8NFQ6 507 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 RPRMQ9NS64 109 aa13.24□□□□□ -0.29
USP4-201ENST00000265560 AMMECR1Q9Y4X0 333 aaPredicted RBP13.24□□□□□ -0.29
USP4-201ENST00000265560 WT1-ASQ06250 92 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 PSG5Q15238 335 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 MMDQ15546 238 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 VMA21Q3ZAQ7 101 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 AKR1C8PQ5T2L2 129 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 FAM71F2Q6NXP2 309 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 OR13C7P0DN81 318 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 SNCAP37840 140 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 DVL1P1P54792 670 aaPredicted RBP13.23□□□□□ -0.29
USP4-201ENST00000265560 FGF8P55075 233 aaPredicted RBP13.23□□□□□ -0.29
USP4-201ENST00000265560 GCSAMLQ5JQS6 135 aa13.23□□□□□ -0.29
USP4-201ENST00000265560 FAM103A1Q9BTL3 118 aaKnown RBP13.23□□□□□ -0.29
USP4-201ENST00000265560 IGHV3-21A0A0B4J1V1 117 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 ODF3BA8MYP8 253 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 VENTXO95231 258 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 TSPAN15O95858 294 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 USF1P22415 310 aaPredicted RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 SSX7Q7RTT5 188 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 TMEM167AQ8TBQ9 72 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 SFT2D1Q8WV19 159 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 PINX1Q96BK5 328 aaKnown RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 ACTL6BO94805 426 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 CD1BP29016 333 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 BTNL8Q6UX41 500 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 PIP4P2Q8N4L2 257 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 GNPNAT1Q96EK6 184 aaPredicted RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 TMEM147Q9BVK8 224 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 TREM1Q9NP99 234 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 NDUFA4L2Q9NRX3 87 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 KPTNQ9Y664 436 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 FOXH1O75593 365 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 SNRNP70P08621 437 aaKnown RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 SAA4P35542 130 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 ARSJQ5FYB0 599 aaPredicted RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 FAM120AOSQ5T036 256 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 LCN15Q6UWW0 184 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 OR1L8Q8NGR8 309 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 SAT2Q96F10 170 aaPredicted RBP13.22□□□□□ -0.29
USP4-201ENST00000265560 SIGLEC9Q9Y336 463 aa13.22□□□□□ -0.29
USP4-201ENST00000265560 C9JQL5 133 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 AREGP15514 252 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 RAB2AP61019 212 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 CLEC12BQ2HXU8 276 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 ACSM6Q6P461 480 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 SSMEM1Q8WWF3 244 aa13.21□□□□□ -0.29
USP4-201ENST00000265560 NCBP2LA6PVI3 153 aaKnown RBP13.21□□□□□ -0.3
USP4-201ENST00000265560 A8MXK9 166 aa13.21□□□□□ -0.3
USP4-201ENST00000265560 PLA2G2AP14555 144 aa13.21□□□□□ -0.3
USP4-201ENST00000265560 BLOC1S1P78537 153 aa13.21□□□□□ -0.3
USP4-201ENST00000265560 PARP11Q9NR21 331 aa13.21□□□□□ -0.3
USP4-201ENST00000265560 LRRC20Q8TCA0 184 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 CFHR4Q92496 578 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 AIFM2Q9BRQ8 373 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 MED9Q9NWA0 146 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 LGALS7P47929 136 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 PRSS8Q16651 343 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 HSD17B13Q7Z5P4 300 aaPredicted RBP13.2□□□□□ -0.3
USP4-201ENST00000265560 PPP1R27Q86WC6 154 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 OR5B3Q8NH48 314 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 VSTM2AQ8TAG5 236 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 EAF1Q96JC9 268 aaPredicted RBP13.2□□□□□ -0.3
USP4-201ENST00000265560 NPCDR1Q9BY65 106 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 ZNF257Q9Y2Q1 563 aa13.2□□□□□ -0.3
USP4-201ENST00000265560 PRSS46E5RG02 174 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 APOC3P02656 99 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 CEACAM3P40198 252 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 RAB11AP62491 216 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 PDLIM3Q53GG5 364 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms