RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 CHODLQ9H9P2 273 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 IGFBP2P18065 325 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 PRR20EP86478 221 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 PRR20CP86479 221 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 PRR20DP86480 221 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 PRR20BP86481 221 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 PRR20AP86496 221 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 ZNF600Q6ZNG1 722 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 ZCCHC14Q8WYQ9 949 aaKnown RBP12.5□□□□□ -0.41
DDX56-201ENST00000258772 NEUROG1Q92886 237 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 HINT2Q9BX68 163 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 GCM1Q9NP62 436 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 OR51B2Q9Y5P1 312 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 RAI1Q7Z5J4 1906 aaPredicted RBP12.49□□□□□ -0.41
DDX56-201ENST00000258772 A8MWP6 167 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 CEACAM4O75871 244 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 MT-CO2P00403 227 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 TCF23Q7RTU1 214 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 MRPL41Q8IXM3 137 aaKnown RBP12.49□□□□□ -0.41
DDX56-201ENST00000258772 RPRMLQ8N4K4 120 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 ZADH2Q8N4Q0 377 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 OR4P4Q8NGL7 312 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 EP300Q09472 2414 aaPredicted RBP12.49□□□□□ -0.41
DDX56-201ENST00000258772 SFTPCP11686 197 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 YPEL3P61236 119 aaPredicted RBP12.49□□□□□ -0.41
DDX56-201ENST00000258772 C3orf36Q3SXR2 165 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 STUMQ69YW2 141 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 DEFB108BQ8NET1 73 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 FAM215AQ9Y5M1 114 aa12.49□□□□□ -0.41
DDX56-201ENST00000258772 FNDC10F2Z333 226 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 J3QR06 171 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 LINC00869P0C866 280 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 CORO2AQ92828 525 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 C11orf52Q96A22 123 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 NOL4LQ96MY1 436 aaPredicted RBP12.48□□□□□ -0.41
DDX56-201ENST00000258772 GAFA1Q96PS6 74 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 PRNDQ9UKY0 176 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 DYSFO75923 2080 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 CNOT1A5YKK6 2376 aaKnown RBP12.48□□□□□ -0.41
DDX56-201ENST00000258772 K7EN84 100 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 MMP23AO75900 390 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 GNG10P50151 68 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 TNFAIP6P98066 277 aaPredicted RBP12.48□□□□□ -0.41
DDX56-201ENST00000258772 TMEM256Q8N2U0 113 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 WFIKKN1Q96NZ8 548 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 UHRF2Q96PU4 802 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 CCL13Q99616 98 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 IL19Q9UHD0 177 aa12.48□□□□□ -0.41
DDX56-201ENST00000258772 IGHV1-46P01743 117 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 CT45A6P0DMU7 189 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 CT45A5P0DMU8 189 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 CT45A7P0DMV0 189 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 HLA-DRB5Q30154 266 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 MIR17HGQ75NE6 70 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 SFXN3Q9BWM7 321 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 LINC00574Q9H8X3 128 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 SLC45A2Q9UMX9 530 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 TP53TG5Q9Y2B4 290 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 ZNF257Q9Y2Q1 563 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 LY96Q9Y6Y9 160 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 OTOGLQ3ZCN5 2332 aa12.47□□□□□ -0.41
DDX56-201ENST00000258772 A0A1B0GUS0 222 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 SRRM4A7MD48 611 aaKnown RBP12.46□□□□□ -0.41
DDX56-201ENST00000258772 C9JCJ5 164 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 UPK2O00526 184 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 NUPR1O60356 82 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 ACTL6BO94805 426 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 AREGP15514 252 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 ADMP35318 185 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 SELENOVP59797 346 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 PRCDQ00LT1 54 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 ZNF90Q03938 601 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 ZNF788Q6ZQV5 615 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 PLEKHA3Q9HB20 300 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 IL36BQ9NZH7 164 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 SLC17A3O00476 420 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 IGKV1-16P04430 117 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 IQCJQ1A5X6 159 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 SLC25A48Q6ZT89 311 aaKnown RBP12.46□□□□□ -0.41
DDX56-201ENST00000258772 FAM216BQ8N7L0 139 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 FAM122AQ96E09 287 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 LRFN3Q9BTN0 628 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 PARD6AQ9NPB6 346 aa12.46□□□□□ -0.41
DDX56-201ENST00000258772 TRAV9-1A0A075B6T8 112 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 C22orf34Q6ZV56 151 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 MOB3BQ86TA1 216 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 EAF1Q96JC9 268 aaPredicted RBP12.45□□□□□ -0.42
DDX56-201ENST00000258772 NABP2Q9BQ15 211 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 SLC35D1Q9NTN3 355 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 SLC25A10Q9UBX3 287 aaPredicted RBP12.45□□□□□ -0.42
DDX56-201ENST00000258772 RPUSD1Q9UJJ7 312 aaKnown RBP12.45□□□□□ -0.42
DDX56-201ENST00000258772 IGKV1OR2-108A0A075B7D4 117 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 A0A1B0GV90 55 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 TM4SF5O14894 197 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 OR4A8P0C604 315 aa12.45□□□□□ -0.42
DDX56-201ENST00000258772 CFAP47Q6ZTR5 3102 aa12.44□□□□□ -0.42
DDX56-201ENST00000258772 TEX50A0A1B0GTY4 177 aa12.44□□□□□ -0.42
DDX56-201ENST00000258772 PSG5Q15238 335 aa12.44□□□□□ -0.42
DDX56-201ENST00000258772 SSX2Q16385 188 aa12.44□□□□□ -0.42
DDX56-201ENST00000258772 RTL8BQ17RB0 113 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms