RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 OR4A47Q6IF82 309 aa15□□□□□ -0.01
CLN3-263ENST00000637871 SSX9Q7RTT3 188 aa15□□□□□ -0.01
CLN3-263ENST00000637871 RCC1LQ96I51 464 aaKnown RBP15□□□□□ -0.01
CLN3-263ENST00000637871 PCGF1Q9BSM1 259 aa15□□□□□ -0.01
CLN3-263ENST00000637871 SLC39A9Q9NUM3 307 aa15□□□□□ -0.01
CLN3-263ENST00000637871 BET1LQ9NYM9 111 aa15□□□□□ -0.01
CLN3-263ENST00000637871 WDR83OSQ9Y284 106 aa15□□□□□ -0.01
CLN3-263ENST00000637871 RFNGQ9Y644 331 aa15□□□□□ -0.01
CLN3-263ENST00000637871 LOC102723971A0A1B0GUV8 181 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 H7C2Y5 167 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 DVL1O14640 695 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 CYB5BO43169 146 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 SRP19P09132 144 aaKnown RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 CT45A6P0DMU7 189 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 CT45A5P0DMU8 189 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 CT45A7P0DMV0 189 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 IL3RAP26951 378 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 CD1BP29016 333 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 GNG10P50151 68 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 ZNF137PP52743 207 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 OR13D1Q8NGV5 346 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 OR4A5Q8NH83 315 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 LEAP2Q969E1 77 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 ACTR3CQ9C0K3 210 aaPredicted RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 CTXND1A0A1B0GTU2 59 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 UPK2O00526 184 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 NUPL2O15504 423 aaKnown RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 IGHV3-7P01780 117 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 RBP4P02753 201 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 HOXA1P49639 335 aaPredicted RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 ICAM4Q14773 271 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 TMEM249Q2WGJ8 235 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 ACOT6Q3I5F7 207 aaPredicted RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 TMEM155Q4W5P6 130 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 ETV3LQ6ZN32 361 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 C1orf229Q6ZS94 237 aaPredicted RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 C15orf54Q8N8G6 183 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 VSTM2AQ8TAG5 236 aa14.99□□□□□ -0.01
CLN3-263ENST00000637871 H1FXQ92522 213 aaKnown RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 NEIL1Q96FI4 390 aaPredicted RBP14.99□□□□□ -0.01
CLN3-263ENST00000637871 ANKRD17O75179 2603 aaKnown RBP14.98□□□□□ -0.01
CLN3-263ENST00000637871 A0A1W2PPE3 182 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 MMP23AO75900 390 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 CDKN1AP38936 164 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 PDPNQ86YL7 162 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 OR5AN1Q8NGI8 311 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 OR5B3Q8NH48 314 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 OR9G1Q8NH87 305 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 CCL19Q99731 98 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 RARRES2Q99969 163 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 NPCDR1Q9BY65 106 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 PDZD2O15018 2839 aa14.98□□□□□ -0.01
CLN3-263ENST00000637871 ARFGEF3Q5TH69 2177 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 MAP1LC3B2A6NCE7 125 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 J3QR06 171 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 BCL2P10415 239 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 MC5RP33032 325 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 TMEM177Q53S58 311 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 C11orf71Q6IPW1 123 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 MAP1LC3BQ9GZQ8 125 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 RAB1BQ9H0U4 201 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 VAX2Q9UIW0 290 aa14.97□□□□□ -0.01
CLN3-263ENST00000637871 KBTBD11O94819 623 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 F12P00748 615 aaPredicted RBP14.96□□□□□ -0.01
CLN3-263ENST00000637871 RAB13P51153 203 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 DLX6P56179 175 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 HAGHQ16775 308 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 LYPD2Q6UXB3 125 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 DTX2Q86UW9 622 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 OR10X1Q8NGY0 326 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 LHX4Q969G2 390 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 NPVFQ9HCQ7 196 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 CBLN4Q9NTU7 201 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 OR51B2Q9Y5P1 312 aa14.96□□□□□ -0.01
CLN3-263ENST00000637871 A0A1B0GV50 99 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 C7orf77A4D0Y5 90 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 INS-IGF2F8WCM5 200 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 M0R036 132 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 OR13C7P0DN81 318 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 PRCDQ00LT1 54 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 FLI1Q01543 452 aaPredicted RBP14.95□□□□□ -0.02
CLN3-263ENST00000637871 RAB31Q13636 194 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 ZNF726P1Q15940 193 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 FFAR4Q5NUL3 377 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 OR10G9Q8NGN4 311 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 OR10G7Q8NGN6 311 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 RPS10P5Q9NQ39 176 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 MANBALQ9NQG1 85 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 CTSZQ9UBR2 303 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 B4DEV8 164 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 IFNA4P05014 189 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 CCL3L1P16619 93 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 NPY1RP25929 384 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 OPRK1P41145 380 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 PNRC1Q12796 327 aaPredicted RBP14.95□□□□□ -0.02
CLN3-263ENST00000637871 AWAT1Q58HT5 328 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 TMEM88Q6PEY1 159 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 LCN15Q6UWW0 184 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 SLC35E3Q7Z769 313 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 VKORC1L1Q8N0U8 176 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms