RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 DNM1P46Q6ZS02 220 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 LRP11Q86VZ4 500 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 PRR15Q8IV56 129 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 RAB42Q8N4Z0 105 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 C3orf22Q8N5N4 141 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 TMEM75Q8N9X5 138 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 ZFP62Q8NB50 900 aaPredicted RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 OR11H7Q8NGC8 314 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 OR9G1Q8NH87 305 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 RTN4IP1Q8WWV3 396 aaPredicted RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 PSMF1Q92530 271 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SLC25A46Q96AG3 418 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 NEURL3Q96EH8 262 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 CIB3Q96Q77 187 aaPredicted RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 SPIN2AQ99865 258 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SPIN2BQ9BPZ2 258 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 TM2D3Q9BRN9 247 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 RHNO1Q9BSD3 238 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SNRNP25Q9BV90 132 aaKnown RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 TSSK6Q9BXA6 273 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SRXN1Q9BYN0 137 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SELENOIQ9C0D9 397 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 IMUPQ9GZP8 106 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 DUSP21Q9H596 190 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 FKBP11Q9NYL4 201 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 MSRB1Q9NZV6 116 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 CACNG5Q9UF02 275 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 POMPQ9Y244 141 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 FIS1Q9Y3D6 152 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 HES2Q9Y543 173 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 KIF13BQ9NQT8 1826 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SMCHD1A6NHR9 2005 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 A2ML1A8K2U0 1454 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 SCAF11Q99590 1463 aaKnown RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 FANCD2Q9BXW9 1451 aa2.32□□□□□ -2.04
VIM-210ENST00000637053 INO80Q9ULG1 1556 aaPredicted RBP2.32□□□□□ -2.04
VIM-210ENST00000637053 VWA8A3KMH1 1905 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 TTC3P53804 2025 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 CKAP5Q14008 2032 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 SMIM26A0A096LP01 95 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 IGHV2-26A0A0B4J1V2 119 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 IGHV1-69-2A0A0G2JMI3 117 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 LOC389332A0A1B0GUA5 103 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 TCRBV3S1A0A5B6 114 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 EPOPA6NHQ4 379 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 CD300LBA8K4G0 201 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 KRTAP9-6A8MVA2 160 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 F5H5P2 479 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 H3BQ15 152 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 PSPHP1O15172 72 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 RER1O15258 196 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 GSTZ1O43708 216 aaPredicted RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 DEDDO75618 318 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 IFITM1P13164 125 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 OR10J1P30954 320 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 VDAC2P45880 294 aaPredicted RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 INSL3P51460 131 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 TMBIM6P55061 237 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 ELOCQ15369 112 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 MSMO1Q15800 293 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 KRTAP27-1Q3LI81 207 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 C6orf99Q4VX62 202 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 UNQ5815/PRO19632Q6UWF5 114 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 AMTNQ6UX39 209 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 RFLNAQ6ZTI6 216 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 SSX8Q7RTT4 187 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 WDR86Q86TI4 376 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 NR2C2APQ86WQ0 139 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 RPS19BP1Q86WX3 136 aaKnown RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 YIPF7Q8N8F6 280 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 SMRP1Q8NCR6 262 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 OR4K13Q8NH42 304 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 OR51H1Q8NH63 302 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 SGMS2Q8NHU3 365 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 RPS4Y2Q8TD47 263 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 ELSPBP1Q96BH3 223 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 GNPNAT1Q96EK6 184 aaPredicted RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 DPH3Q96FX2 82 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 OR2A5Q96R48 311 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 PEBP4Q96S96 227 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 C11orf68Q9H3H3 251 aaKnown RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 BANF2Q9H503 90 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 OCIAD1Q9NX40 245 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 FBXL12Q9NXK8 326 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 MARCOQ9UEW3 520 aaPredicted RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 MRPS16Q9Y3D3 137 aaKnown RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 MLH3Q9UHC1 1453 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 SYNJ1O43426 1573 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 FRMPD1Q5SYB0 1578 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 REREQ9P2R6 1566 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 ANKRD26Q9UPS8 1709 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 ADAMTSL1Q8N6G6 1762 aa2.31□□□□□ -2.04
VIM-210ENST00000637053 BRCA1P38398 1863 aaKnown RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 FNDC1Q4ZHG4 1894 aaPredicted RBP2.31□□□□□ -2.04
VIM-210ENST00000637053 PHF3Q92576 2039 aaKnown RBP2.3□□□□□ -2.04
VIM-210ENST00000637053 IGHV3OR16-13A0A075B7E8 117 aa2.3□□□□□ -2.04
VIM-210ENST00000637053 TRAV27A0A087WT01 109 aa2.3□□□□□ -2.04
VIM-210ENST00000637053 TRGV10A0A0A0MS01 117 aa2.3□□□□□ -2.04
VIM-210ENST00000637053 IGHV6-1A0A0B4J1U7 121 aa2.3□□□□□ -2.04
VIM-210ENST00000637053 TRBV7-6A0A0J9YX20 115 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms