RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KLK9Q2XQG4 91 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 BPIFB6Q8NFQ5 453 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 OR6M1Q8NGM8 313 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 OR13F1Q8NGS4 319 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 CXorf58Q96LI9 332 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 RIMS4Q9H426 269 aaPredicted RBP10.46□□□□□ -0.73
CLN3-249ENST00000636685 DUSP21Q9H596 190 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 PLCXD1Q9NUJ7 323 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 KLK9Q9UKQ9 250 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 VPS13BQ7Z7G8 4022 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 A0A0A6YYD4 124 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 DHFRP00374 187 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 LALBAP00709 142 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 HIST1H1BP16401 226 aaKnown RBP10.45□□□□□ -0.74
CLN3-249ENST00000636685 GABRB1P18505 474 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 DUTP33316 252 aaKnown RBP10.45□□□□□ -0.74
CLN3-249ENST00000636685 CMC4P56277 68 aaPredicted RBP10.45□□□□□ -0.74
CLN3-249ENST00000636685 GPR107Q5VW38 600 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 VKORC1L1Q8N0U8 176 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 GGHQ92820 318 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 RNF2Q99496 336 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 BCL7BQ9BQE9 202 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 UQCC2Q9BRT2 126 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 C20orf24Q9BUV8 137 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 TMEM59Q9BXS4 323 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 GHRLQ9UBU3 117 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 MGAT4AQ9UM21 535 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 X6R8D5 127 aa10.45□□□□□ -0.74
CLN3-249ENST00000636685 PTGES3LE9PB15 166 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 TGOLN2O43493 480 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
CLN3-249ENST00000636685 ZNF735P0CB33 412 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 DEFA4P12838 97 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 CALRP27797 417 aaKnown RBP10.44□□□□□ -0.74
CLN3-249ENST00000636685 ETV1P50549 477 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 NEDD8Q15843 81 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 LAIR2Q6ISS4 152 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 ZFP41Q8N8Y5 198 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 DCUN1D5Q9BTE7 237 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 TM2D1Q9BX74 207 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 ETV7Q9Y603 341 aa10.44□□□□□ -0.74
CLN3-249ENST00000636685 TRDCB7Z8K6 153 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 BET1O15155 118 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 SOCS1O15524 211 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 RGS10O43665 173 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 SRMP19623 302 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 UNC119Q13432 240 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 YIF1BQ5BJH7 314 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 LEMD1Q68G75 181 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 GBGT1Q8N5D6 347 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 RHOXF1Q8NHV9 184 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 RAB2BQ8WUD1 216 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 ADTRPQ96IZ2 230 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 CCDC90BQ9GZT6 254 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 OR51E2Q9H255 320 aa10.43□□□□□ -0.74
CLN3-249ENST00000636685 OR2T8A6NH00 312 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 ZNF705EA8MWA4 302 aaPredicted RBP10.42□□□□□ -0.74
CLN3-249ENST00000636685 FCGR3BO75015 233 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 UBBP0CG47 229 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 PSMD7P51665 324 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 IGSF11Q5DX21 431 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 PRSS48Q7RTY5 328 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 SPATA12Q7Z6I5 190 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 NKAIN3Q8N8D7 197 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 PGLYRP3Q96LB9 341 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 DERL3Q96Q80 235 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 C12orf4Q9NQ89 552 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 BABAM2Q9NXR7 383 aa10.42□□□□□ -0.74
CLN3-249ENST00000636685 RBM7Q9Y580 266 aaKnown RBP10.42□□□□□ -0.74
CLN3-249ENST00000636685 IGHV3-49A0A0A0MS15 119 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 H3BMQ9 156 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 RAB27BO00194 218 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 NDUFA4O00483 81 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 KBTBD11O94819 623 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 SERPINB10P48595 397 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 OR2B11Q5JQS5 317 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 ZNF367Q7RTV3 350 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 CROCCP3Q8IVE0 287 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 OR4A4PQ8NGN8 299 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 FCGR1BQ92637 280 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 MRPS18AQ9NVS2 196 aaKnown RBP10.41□□□□□ -0.74
CLN3-249ENST00000636685 SMPXQ9UHP9 88 aa10.41□□□□□ -0.74
CLN3-249ENST00000636685 CGB1A6NKQ9 187 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 K7EMT4 169 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 CHEK1O14757 476 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 FABP7O15540 132 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 PTBP1P26599 531 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLN3-249ENST00000636685 IRF3Q14653 427 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 RNF212Q495C1 297 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 TMPRSS11AQ6ZMR5 421 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 OR10J5Q8NHC4 309 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 TMEM167AQ8TBQ9 72 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 Q96MT0 163 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 OR2A7Q96R45 310 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 RHPN1-AS1Q9BWJ2 59 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 PLGRKTQ9HBL7 147 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 FGF20Q9NP95 211 aaPredicted RBP10.4□□□□□ -0.74
CLN3-249ENST00000636685 PSORS1C1Q9UIG5 152 aa10.4□□□□□ -0.74
CLN3-249ENST00000636685 TRBV6-7A0A0A0MS04 114 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 PNMA8CA0A1B0GUJ8 204 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms