RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 RPL27AP46776 148 aaKnown RBP13.9□□□□□ -0.18
CLN3-247ENST00000636351 RPL23AP62750 156 aaKnown RBP13.9□□□□□ -0.18
CLN3-247ENST00000636351 AKIRIN2Q53H80 203 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 MINDY2Q8NBR6 621 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 FYTTD1Q96QD9 318 aaKnown RBP13.9□□□□□ -0.18
CLN3-247ENST00000636351 SPIN2AQ99865 258 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 SPIN2BQ9BPZ2 258 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 RTBDNQ9BSG5 229 aaPredicted RBP13.9□□□□□ -0.18
CLN3-247ENST00000636351 NAA60Q9H7X0 242 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 ZNF355PQ9NSJ1 428 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 GPR132Q9UNW8 380 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 MSGN1A6NI15 193 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 K7EIL1 84 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 UPK2O00526 184 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 PF4P02776 101 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 OR5AC1P0C628 307 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 AKR1C2P52895 323 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 SP6Q3SY56 376 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 C19orf54Q5BKX5 351 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 TMED4Q7Z7H5 227 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 KLHL30-AS1Q8NEE0 82 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 OR5M8Q8NGP6 311 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 RNASE11Q8TAA1 199 aaKnown RBP13.89□□□□□ -0.19
CLN3-247ENST00000636351 CASTOR1Q8WTX7 329 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 CCDC32Q9BV29 185 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 WDR12Q9GZL7 423 aaKnown RBP13.89□□□□□ -0.19
CLN3-247ENST00000636351 ZFP57Q9NU63 452 aa13.89□□□□□ -0.19
CLN3-247ENST00000636351 TRAV3A0A0B4J244 114 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 NAP1L6A6NFF2 107 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 CRYM-AS1A6NIL9 109 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 B3GALNT1O75752 331 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 SNAPC5O75971 98 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 AKR1C4P17516 323 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 PSMB8P28062 276 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 H2BFWTQ7Z2G1 175 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 SGPP2Q8IWX5 399 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 ADAD2Q8NCV1 583 aaKnown RBP13.88□□□□□ -0.19
CLN3-247ENST00000636351 OR5T1Q8NG75 326 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 COMMD5Q9GZQ3 224 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 COA4Q9NYJ1 87 aa13.88□□□□□ -0.19
CLN3-247ENST00000636351 SOX15O60248 233 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 ATG12O94817 140 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 IGKV1-39P01597 117 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 IGLV1-40P01703 118 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 IGKV1D-39P04432 117 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 MYOD1P15172 320 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 CCR6P51684 374 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 OR2B8PP59922 312 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 ZNF846Q147U1 533 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 RBMS2Q15434 407 aaKnown RBP13.87□□□□□ -0.19
CLN3-247ENST00000636351 C11orf87Q6NUJ2 197 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 RNF152Q8N8N0 203 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 TMEM68Q96MH6 324 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 MS4A10Q96PG2 267 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 TSC22D3Q99576 134 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 SLC25A21Q9BQT8 299 aaPredicted RBP13.87□□□□□ -0.19
CLN3-247ENST00000636351 C7orf50Q9BRJ6 194 aaKnown RBP13.87□□□□□ -0.19
CLN3-247ENST00000636351 KLK15Q9H2R5 256 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 NSG2Q9Y328 171 aa13.87□□□□□ -0.19
CLN3-247ENST00000636351 HMX3A6NHT5 357 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 RBMXL2O75526 392 aaKnown RBP13.86□□□□□ -0.19
CLN3-247ENST00000636351 OR9G9P0C7N8 305 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 UCP1P25874 307 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 TPPP2P59282 170 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 ASPHD1Q5U4P2 390 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 C18orf65Q6ZTR6 163 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 ZNF695Q8IW36 515 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 TMEM230Q96A57 120 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 SEC22AQ96IW7 307 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 KCNIP3Q9Y2W7 256 aa13.86□□□□□ -0.19
CLN3-247ENST00000636351 TRGV3P03979 118 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 RAB9AP51151 201 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 KRTAP10-11P60412 298 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 DHODHQ02127 395 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 C8orf86Q6ZUL3 223 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 OR4A16Q8NH70 328 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 RRNAD1Q96FB5 475 aaKnown RBP13.85□□□□□ -0.19
CLN3-247ENST00000636351 RCC1LQ96I51 464 aaKnown RBP13.85□□□□□ -0.19
CLN3-247ENST00000636351 HINT2Q9BX68 163 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 QTRT1Q9BXR0 403 aaKnown RBP13.85□□□□□ -0.19
CLN3-247ENST00000636351 TMEM222Q9H0R3 208 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 PRNDQ9UKY0 176 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 OR51B2Q9Y5P1 312 aa13.85□□□□□ -0.19
CLN3-247ENST00000636351 WI2-2373I1.2A0A1W2PRP0 233 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 TEX22C9J3V5 150 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 H3BUA1 57 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 IL6RP08887 468 aaPredicted RBP13.84□□□□□ -0.19
CLN3-247ENST00000636351 ANXA3P12429 323 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 DEFB121Q5J5C9 76 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 SLC25A42Q86VD7 318 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 CENPSQ8N2Z9 138 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 OR1L8Q8NGR8 309 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 OR5B12Q96R08 314 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 SLA2Q9H6Q3 261 aa13.84□□□□□ -0.19
CLN3-247ENST00000636351 RYR3Q15413 4870 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 C15orf61A6NNL5 157 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 E7EUB6 86 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 LYRM1O43325 122 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 IGKV1-5P01602 117 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 FGF2P09038 288 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms