RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SPAG16Q8N0X2 631 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 OR52B4Q8NGK2 314 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 Q9H521 79 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 ALMS1Q8TCU4 4167 aa12.08□□□□□ -0.47
CLN3-246ENST00000636228 HRASP01112 189 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 FGF9P31371 208 aaPredicted RBP12.08□□□□□ -0.48
CLN3-246ENST00000636228 ARPC4P59998 168 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 MXD1Q05195 221 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 UBE2UQ5VVX9 321 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 SFXN4Q6P4A7 337 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 ZNF773Q6PK81 442 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 BEST4Q8NFU0 473 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 OR5H6Q8NGV6 325 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 OVOL2Q9BRP0 275 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 RNF167Q9H6Y7 350 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 HRASLSQ9HDD0 168 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 RHBDL2Q9NX52 303 aa12.08□□□□□ -0.48
CLN3-246ENST00000636228 IGLV11-55A0A075B6I3 123 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 TRAV18A0A075B6X5 111 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 SULT1C2O00338 296 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 DHFRP00374 187 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 RPA2P15927 270 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 GPR183P32249 361 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 SDC2P34741 201 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 OR2B8PP59922 312 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 KLK9Q2XQG4 91 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 TIMM50Q3ZCQ8 353 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 ZNF585BQ52M93 769 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 SPARTQ8N0X7 666 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 GGTLC1Q9BX51 225 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 KLK9Q9UKQ9 250 aa12.07□□□□□ -0.48
CLN3-246ENST00000636228 LOC102724200A0A096LPH7 203 aaPredicted RBP12.06□□□□□ -0.48
CLN3-246ENST00000636228 TRBV7-1A0A0A6YYK4 115 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 A8MWP6 167 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 HIST1H1BP16401 226 aaKnown RBP12.06□□□□□ -0.48
CLN3-246ENST00000636228 FXYD4P59646 89 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 TPRA1Q86W33 373 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 HOGA1Q86XE5 327 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 OR13F1Q8NGS4 319 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 SLC25A38Q96DW6 304 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 SLC5A7Q9GZV3 580 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 BET1LQ9NYM9 111 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 SSR3Q9UNL2 185 aa12.06□□□□□ -0.48
CLN3-246ENST00000636228 IGLC7A0M8Q6 106 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 UPK2O00526 184 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 SCGNO76038 276 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 PPYP01298 95 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 GABARAPL2P60520 117 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 PMS2P11Q13670 270 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 RBPMS2Q6ZRY4 209 aaKnown RBP12.05□□□□□ -0.48
CLN3-246ENST00000636228 OR10W1Q8NGF6 305 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 OR4A5Q8NH83 315 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 ZNF502Q8TBZ5 544 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 CXorf58Q96LI9 332 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 UBQLN2Q9UHD9 624 aa12.05□□□□□ -0.48
CLN3-246ENST00000636228 IGHV3-21A0A0B4J1V1 117 aa12.04□□□□□ -0.48
CLN3-246ENST00000636228 MEIS3P1A6NDR6 274 aa12.04□□□□□ -0.48
CLN3-246ENST00000636228 EWSR1Q01844 656 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-246ENST00000636228 IDNKQ5T6J7 187 aa12.04□□□□□ -0.48
CLN3-246ENST00000636228 PLET1Q6UQ28 207 aa12.04□□□□□ -0.48
CLN3-246ENST00000636228 OR51H1Q8NH63 302 aa12.04□□□□□ -0.48
CLN3-246ENST00000636228 S1PR2O95136 353 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 HPRT1P00492 218 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 C8orf88P0DMB2 117 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 TAS2R31P59538 309 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 ANKRD55Q3KP44 614 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 ZNF818PQ6ZRF7 136 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 TMEM17Q86X19 198 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 OR1L6Q8NGR2 347 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 COMMD5Q9GZQ3 224 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 TMEM140Q9NV12 185 aa12.03□□□□□ -0.48
CLN3-246ENST00000636228 MRPL27Q9P0M9 148 aaKnown RBP12.03□□□□□ -0.48
CLN3-246ENST00000636228 IGHV3OR16-8A0A075B7F1 116 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 A0A0J9YWU9 116 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 LOC100506127A0A0U1RQW1 187 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 CXorf65A6NEN9 183 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 OR2T8A6NH00 312 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 MRPS14O60783 128 aaKnown RBP12.02□□□□□ -0.49
CLN3-246ENST00000636228 NQO2P16083 231 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 PTBP1P26599 531 aaKnown RBP eCLIP12.02□□□□□ -0.49
CLN3-246ENST00000636228 MSMO1Q15800 293 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 OR2C3Q8N628 320 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 ZBTB34Q8NCN2 500 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 DMBX1Q8NFW5 382 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 AIFM2Q9BRQ8 373 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 AUNIPQ9H7T9 357 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 UFC1Q9Y3C8 167 aa12.02□□□□□ -0.49
CLN3-246ENST00000636228 TRAV25A0A0B4J276 109 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 TEX50A0A1B0GTY4 177 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 RBFOX2O43251 390 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-246ENST00000636228 LY6G6CO95867 125 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 OR13C7P0DN81 318 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 CATR1Q13166 79 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 AADACL3Q5VUY0 350 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 SLC25A24Q6NUK1 477 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 GIMAP1Q8WWP7 306 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 MARC2Q969Z3 335 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 HINT2Q9BX68 163 aa12.01□□□□□ -0.49
CLN3-246ENST00000636228 QTRT1Q9BXR0 403 aaKnown RBP12.01□□□□□ -0.49
CLN3-246ENST00000636228 ZNF436Q9C0F3 470 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms