RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UMODP07911 640 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 UQCRFS1P47985 274 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 ZNF718Q3SXZ3 478 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 SPATA31B1PQ5VZV4 182 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 AGMATQ9BSE5 352 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 TCF19Q9Y242 345 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 THADAQ6YHU6 1953 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 HLA-DQA1P01909 254 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 APELAP0DMC3 54 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 RPL39P5Q59GN2 51 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 ZFP30Q9Y2G7 519 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 F2Z2F3 143 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 LAMTOR5O43504 91 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 MPDU1O75352 247 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 NUDT3O95989 172 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 IL6RP08887 468 aaPredicted RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 OPRK1P41145 380 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 HOXA4Q00056 320 aaPredicted RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 ACSF3Q4G176 576 aaPredicted RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 ASCL4Q6XD76 172 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 H1FXQ92522 213 aaKnown RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 RND1Q92730 232 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 FAM122AQ96E09 287 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 HSPB7Q9UBY9 170 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 IGFBP2P18065 325 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 ERHP84090 104 aaKnown RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 FOXL1Q12952 345 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 MIR17HGQ75NE6 70 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 OR4S2Q8NH73 311 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 SSBP4Q9BWG4 385 aaPredicted RBP9.26□□□□□ -0.93
CLN3-244ENST00000636147 TMEM140Q9NV12 185 aa9.26□□□□□ -0.93
CLN3-244ENST00000636147 TNCP24821 2201 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 TMEM210A6NLX4 147 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 PRSS47A8MTI9 375 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 H3BTX0 84 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 J3QR06 171 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 MRPS11P82912 194 aaKnown RBP9.25□□□□□ -0.93
CLN3-244ENST00000636147 PMCHL2Q9BQD1 86 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 TXNDC17Q9BRA2 123 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 GSX1Q9H4S2 264 aaPredicted RBP9.25□□□□□ -0.93
CLN3-244ENST00000636147 ASCL3Q9NQ33 180 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 FBLL1A6NHQ2 334 aaKnown RBP9.25□□□□□ -0.93
CLN3-244ENST00000636147 IGLV3-1P01715 115 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 LINC00614P0C842 121 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 BPIFB3P59826 476 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 ZFP36L1Q07352 338 aaKnown RBP9.25□□□□□ -0.93
CLN3-244ENST00000636147 PLGLAQ15195 96 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 PKIBQ9C010 78 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 WDR54Q9H977 334 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 TMEM251Q8N6I4 163 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 EAF1Q96JC9 268 aaPredicted RBP9.25□□□□□ -0.93
CLN3-244ENST00000636147 NABP2Q9BQ15 211 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 TMEM191AQ9H0A3 160 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 FBXL7Q9UJT9 491 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 WDR83OSQ9Y284 106 aa9.25□□□□□ -0.93
CLN3-244ENST00000636147 TNFSF4P23510 183 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 HTR1DP28221 377 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 PMCHL1Q16048 86 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 RTL8BQ17RB0 113 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 CRIP3Q6Q6R5 217 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 OR2M7Q8NG81 312 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 OR13A1Q8NGR1 328 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 SEPSECSQ9HD40 501 aaKnown RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 IGHV3-21A0A0B4J1V1 117 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 ZNF324O75467 553 aaPredicted RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 RPL24P83731 157 aaKnown RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 NHLH1Q02575 133 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 RNPS1Q15287 305 aaKnown RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 COX19Q49B96 90 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 LDLRAD2Q5SZI1 272 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 ASPHD1Q5U4P2 390 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 OR8B3Q8NGG8 313 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 IMMP1LQ96LU5 166 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 RAB9BQ9NP90 201 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 AMY1AP04745 511 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 CELA3BP08861 270 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 C3orf79P0CE67 100 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 MEOX1P50221 254 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 MAJINQ3KP22 176 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 C17orf82Q86X59 251 aaPredicted RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 C1orf174Q8IYL3 243 aa9.24□□□□□ -0.93
CLN3-244ENST00000636147 UBE2ZQ9H832 354 aaPredicted RBP9.24□□□□□ -0.93
CLN3-244ENST00000636147 CDH23Q9H251 3354 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 TRGV5A0A0B4J1U4 118 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PSPNO60542 156 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 FOXH1O75593 365 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 OR9G9P0C7N8 305 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 FBXW9Q5XUX1 488 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PRSS3P2Q8NHM4 247 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 CT55Q8WUE5 264 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 OR2V2Q96R30 315 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 SAP30LQ9HAJ7 183 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 HES4Q9HCC6 221 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 OR5AL1P0C617 328 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PRDX2P32119 198 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 LTBRP36941 435 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 RPL8P62917 257 aaKnown RBP9.23□□□□□ -0.93
CLN3-244ENST00000636147 MZT1Q08AG7 82 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 COA6Q5JTJ3 125 aaKnown RBP9.23□□□□□ -0.93
CLN3-244ENST00000636147 Q6ZPA2 131 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms