RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 BHLHA15Q7RTS1 189 aaPredicted RBP10.48□□□□□ -0.73
MSH6-213ENST00000614496 OCC1Q8TAD7 63 aa10.48□□□□□ -0.73
MSH6-213ENST00000614496 ADMP35318 185 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 MMD2Q8IY49 270 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 OR5R1Q8NH85 324 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 CALYQ9NYX4 217 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 SPTBN1Q01082 2364 aaKnown RBP10.47□□□□□ -0.73
MSH6-213ENST00000614496 ACACAQ13085 2346 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 DIRC3C9JPN6 131 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 IFNL4K9M1U5 179 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 IGFBP2P18065 325 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ORM2P19652 201 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 LINC01551Q86U37 167 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ODF3L1Q8IXM7 274 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ZNF835Q9Y2P0 537 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 TRBV6-6A0A0A6YYG2 114 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 TRAV3A0A0B4J244 114 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 NKX6-3A6NJ46 265 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 CA2P00918 260 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 USF1P22415 310 aaPredicted RBP10.47□□□□□ -0.73
MSH6-213ENST00000614496 WDR82Q6UXN9 313 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ZADH2Q8N4Q0 377 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 STARD4Q96DR4 205 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 SSBP3Q9BWW4 388 aaPredicted RBP10.47□□□□□ -0.73
MSH6-213ENST00000614496 TMEM167BQ9NRX6 74 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 PRRC2CQ9Y520 2896 aaKnown RBP10.47□□□□□ -0.73
MSH6-213ENST00000614496 IGHV3-21A0A0B4J1V1 117 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ZNF146Q15072 292 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 Q6ZN92 141 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 ATOH7Q8N100 152 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 WDR83OSQ9Y284 106 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 TTC28Q96AY4 2481 aa10.47□□□□□ -0.73
MSH6-213ENST00000614496 C10orf142B7Z368 130 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 SELLP14151 372 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 RAB4AP20338 218 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 ACP1P24666 158 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 LCN2P80188 198 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 SPATA31B1PQ5VZV4 182 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 TCTEX1D1Q8N7M0 179 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 COQ2Q96H96 371 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 IL19Q9UHD0 177 aa10.46□□□□□ -0.73
MSH6-213ENST00000614496 IQCF6A8MYZ5 107 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 TRANK1O15050 2925 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 SERF1AO75920 110 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 HSPE1P61604 102 aaKnown RBP10.46□□□□□ -0.74
MSH6-213ENST00000614496 CCL8P80075 99 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 CENPWQ5EE01 88 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 Q6ZT83 130 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 C11orf1Q9H5F2 150 aa10.46□□□□□ -0.74
MSH6-213ENST00000614496 PRSS8Q16651 343 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 MIR17HGQ75NE6 70 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 HARBI1Q96MB7 349 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 NABP2Q9BQ15 211 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 CPAMD8Q8IZJ3 1885 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 HSBP1L1C9JCN9 74 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 MYOD1P15172 320 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 KIR2DS2P43631 304 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 MFAP2P55001 183 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 CCL17Q92583 94 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 ARL2-SNX15V9GYD0 113 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 WNK2Q9Y3S1 2297 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 SLC25A5P05141 298 aaKnown RBP10.45□□□□□ -0.74
MSH6-213ENST00000614496 RPLP1P05386 114 aaKnown RBP10.45□□□□□ -0.74
MSH6-213ENST00000614496 TREML4Q6UXN2 200 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 DEFB124Q8NES8 71 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 IER2Q9BTL4 223 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 HES4Q9HCC6 221 aa10.45□□□□□ -0.74
MSH6-213ENST00000614496 COLQQ9Y215 455 aaPredicted RBP10.45□□□□□ -0.74
MSH6-213ENST00000614496 YLPM1P49750 1951 aaKnown RBP10.45□□□□□ -0.74
MSH6-213ENST00000614496 SRIP30626 198 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 BRS3P32247 399 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 DUTP33316 252 aaKnown RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 SUB1P53999 127 aaKnown RBP eCLIP10.44□□□□□ -0.746e-8■■■□□ 14.9
MSH6-213ENST00000614496 RNFT1Q5M7Z0 435 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 RNASE7Q9H1E1 156 aaKnown RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 PLCE1Q9P212 2302 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 C15orf62A8K5M9 175 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 MLNRO43193 412 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 Q8NFD4 153 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 FDCSPQ8NFU4 85 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 TRIP6Q15654 476 aaKnown RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 PRR31Q5SQ13 230 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 IBA57Q5T440 356 aaKnown RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 WDR73Q6P4I2 378 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 SEPSECSQ9HD40 501 aaKnown RBP10.44□□□□□ -0.74
MSH6-213ENST00000614496 PRNDQ9UKY0 176 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 SPAARA0A1B0GVQ0 90 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 PAFAH1B2P68402 229 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 SZT2Q5T011 3432 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 RNF7Q9UBF6 113 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 JPT1Q9UK76 154 aa10.44□□□□□ -0.74
MSH6-213ENST00000614496 EREGO14944 169 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 MORN2Q502X0 79 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 OR4A47Q6IF82 309 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 GBGT1Q8N5D6 347 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 ZNF114Q8NC26 417 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 MBNL3Q9NUK0 354 aaKnown RBP10.43□□□□□ -0.74
MSH6-213ENST00000614496 H3BTX0 84 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 FOXH1O75593 365 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms