RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ERVK-16P61578 105 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 RPS16P62249 146 aaKnown RBP10.07□□□□□ -0.8
UPF1-208ENST00000600012 TMEM177Q53S58 311 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 THOC7Q6I9Y2 204 aaKnown RBP10.07□□□□□ -0.8
UPF1-208ENST00000600012 CCDC144NLQ6NUI1 221 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 H2BFWTQ7Z2G1 175 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 OR4D5Q8NGN0 318 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 OSR1Q8TAX0 266 aaPredicted RBP10.07□□□□□ -0.8
UPF1-208ENST00000600012 FLYWCH2Q96CP2 140 aaKnown RBP10.07□□□□□ -0.8
UPF1-208ENST00000600012 RITA1Q96K30 269 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 NMES1Q9C002 83 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 TMEM140Q9NV12 185 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 NSG2Q9Y328 171 aa10.07□□□□□ -0.8
UPF1-208ENST00000600012 TRAV14DV4A0A0A6YYC5 116 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 TRAV3A0A0B4J244 114 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 HRASP01112 189 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 PRB2P02812 416 aaPredicted RBP10.06□□□□□ -0.8
UPF1-208ENST00000600012 HNRNPCP07910 306 aaKnown RBP eCLIP10.06□□□□□ -0.8
UPF1-208ENST00000600012 SNRNP70P08621 437 aaKnown RBP10.06□□□□□ -0.8
UPF1-208ENST00000600012 SAA1P0DJI8 122 aaPredicted RBP10.06□□□□□ -0.8
UPF1-208ENST00000600012 CNTFRP26992 372 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 OR2B8PP59922 312 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 S100A10P60903 97 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 IL15RAQ13261 267 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 RAB32Q13637 225 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 SMCO1Q147U7 214 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 ZFP69Q49AA0 526 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 OR1S1Q8NH92 325 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 PPP1R1CQ8WVI7 109 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 ASB13Q8WXK3 278 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 MALSU1Q96EH3 234 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 RHOVQ96L33 236 aa10.06□□□□□ -0.8
UPF1-208ENST00000600012 LSM5Q9Y4Y9 91 aaKnown RBP10.06□□□□□ -0.8
UPF1-208ENST00000600012 A0A1B0GU03 582 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 CHST1O43916 411 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 FBXO24O75426 580 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 IGKV1D-33P01593 117 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 IGKV1-33P01594 117 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 C1QBP02746 253 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 CD1BP29016 333 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 CYCSP99999 105 aaKnown RBP10.05□□□□□ -0.8
UPF1-208ENST00000600012 HES1Q14469 280 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 HABP2Q14520 560 aaPredicted RBP10.05□□□□□ -0.8
UPF1-208ENST00000600012 POU2AF1Q16633 256 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 HIST2H2BDQ6DRA6 164 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 OR4A47Q6IF82 309 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 FOXRED2Q8IWF2 684 aa10.05□□□□□ -0.8
UPF1-208ENST00000600012 SLC25A17O43808 307 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 PITX3O75364 302 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 MPC2O95563 127 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 IGLV2-23P01705 113 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 MBPP02686 304 aaPredicted RBP10.04□□□□□ -0.8
UPF1-208ENST00000600012 SLC25A6P12236 298 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 NKX2-5P52952 324 aaPredicted RBP10.04□□□□□ -0.8
UPF1-208ENST00000600012 HNF4GQ14541 408 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 CXorf66Q5JRM2 361 aaPredicted RBP10.04□□□□□ -0.8
UPF1-208ENST00000600012 Q8N2B8 174 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 OR11H4Q8NGC9 324 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 GRPEL2Q8TAA5 225 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 PIFOQ8TCI5 191 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 MRAPQ8TCY5 172 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 EAF1Q96JC9 268 aaPredicted RBP10.04□□□□□ -0.8
UPF1-208ENST00000600012 MAGT1Q9H0U3 335 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 ZNF702PQ9H963 129 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 TPSG1Q9NRR2 321 aa10.04□□□□□ -0.8
UPF1-208ENST00000600012 RCL1Q9Y2P8 373 aaKnown RBP10.04□□□□□ -0.8
UPF1-208ENST00000600012 H0YIZ8 118 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 K7EPK0 472 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 UPK2O00526 184 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 RBMXL2O75526 392 aaKnown RBP10.03□□□□□ -0.8
UPF1-208ENST00000600012 MOSP00540 346 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 MYOD1P15172 320 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 PSMB6P28072 239 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 NKX2-1P43699 371 aaPredicted RBP10.03□□□□□ -0.8
UPF1-208ENST00000600012 EIF2B2P49770 351 aaKnown RBP10.03□□□□□ -0.8
UPF1-208ENST00000600012 ARHGDIBP52566 201 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 NSUN5P1Q3KNT7 163 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 OXLD1Q5BKU9 147 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 C11orf87Q6NUJ2 197 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 NOXA1Q86UR1 476 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 NDUFA11Q86Y39 141 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 PUSL1Q8N0Z8 303 aaKnown RBP10.03□□□□□ -0.8
UPF1-208ENST00000600012 FAM71E2Q8N5Q1 922 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 OR4F17Q8NGA8 305 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 OR4A16Q8NH70 328 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 PPP1R14BQ96C90 147 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 OR4F4Q96R69 305 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 QTRT1Q9BXR0 403 aaKnown RBP10.03□□□□□ -0.8
UPF1-208ENST00000600012 SERTAD4Q9NUC0 356 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 BET1LQ9NYM9 111 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 OR5AC2Q9NZP5 309 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 MBD2Q9UBB5 411 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 TCF19Q9Y242 345 aa10.03□□□□□ -0.8
UPF1-208ENST00000600012 FXYD6-FXYD2A0A087WZ82 144 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 FAM90A9PA6NNJ1 464 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 C15orf61A6NNL5 157 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 ST8SIA3O43173 380 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 SSSCA1O60232 199 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 KBTBD11O94819 623 aa10.02□□□□□ -0.81
UPF1-208ENST00000600012 BRS3P32247 399 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms