RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MAP1LC3BQ9GZQ8 125 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 WDR83OSQ9Y284 106 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 PUS1Q9Y606 427 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK3-217ENST00000599538 TREML4Q6UXN2 200 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 OR10G4Q8NGN3 311 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 OR10G9Q8NGN4 311 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 OR10G7Q8NGN6 311 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 CLCC1Q96S66 551 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 NABP2Q9BQ15 211 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 HSPB1P04792 205 aaKnown RBP11.75□□□□□ -0.53
VRK3-217ENST00000599538 IFNA4P05014 189 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 ZNF596Q8TC21 504 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 HARBI1Q96MB7 349 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 SMDT1Q9H4I9 107 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 SLC39A9Q9NUM3 307 aa11.75□□□□□ -0.53
VRK3-217ENST00000599538 AKAP6Q13023 2319 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 TEX50A0A1B0GTY4 177 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 E7EUB6 86 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 KBTBD11O94819 623 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 CA2P00918 260 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 PPOXP50336 477 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 KHDC3LQ587J8 217 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 ARSJQ5FYB0 599 aaPredicted RBP11.74□□□□□ -0.53
VRK3-217ENST00000599538 FAM122CQ6P4D5 195 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 LINC00311Q8N616 119 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 SLC24A4Q8NFF2 622 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 LHX4Q969G2 390 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 RITA1Q96K30 269 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 A0A087X0M5 115 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 IGHV3-72A0A0B4J1Y9 119 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 A0A1B0GX30 115 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 BCL2P10415 239 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 NPY1RP25929 384 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 RPP30P78346 268 aaKnown RBP11.74□□□□□ -0.53
VRK3-217ENST00000599538 C11orf71Q6IPW1 123 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 OR10W1Q8NGF6 305 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 GATAD1Q8WUU5 269 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 ISOC2Q96AB3 205 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 FAM122AQ96E09 287 aa11.74□□□□□ -0.53
VRK3-217ENST00000599538 APOA2P02652 100 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 MOB3BQ86TA1 216 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 ZNF709Q8N972 641 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 OR9G1Q8NH87 305 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 RAB24Q969Q5 203 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 MGST2Q99735 147 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 TMEM133Q9H2Q1 129 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 BET1LQ9NYM9 111 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 PRNDQ9UKY0 176 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 NAV3Q8IVL0 2385 aa11.73□□□□□ -0.53
VRK3-217ENST00000599538 COLCA2A8K830 154 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 H3BQ15 152 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 PRCDQ00LT1 54 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 TMEM177Q53S58 311 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 OSR1Q8TAX0 266 aaPredicted RBP11.72□□□□□ -0.53
VRK3-217ENST00000599538 TMEM186Q96B77 213 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 FLYWCH2Q96CP2 140 aaKnown RBP11.72□□□□□ -0.53
VRK3-217ENST00000599538 CFAP46Q8IYW2 2715 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 MED13LQ71F56 2210 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 YIF1AO95070 293 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 LY86O95711 162 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 FAM90A2PQ658T7 463 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 C8orf31Q8N9H6 132 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 RAB39BQ96DA2 213 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 GGTLC1Q9BX51 225 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 PATZ1Q9HBE1 687 aaKnown RBP11.72□□□□□ -0.53
VRK3-217ENST00000599538 ENY2Q9NPA8 101 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 CBLN4Q9NTU7 201 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 ZNF257Q9Y2Q1 563 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 COL12A1Q99715 3063 aa11.72□□□□□ -0.53
VRK3-217ENST00000599538 TRBV23-1A0A0A0MS06 115 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 IGHV2-26A0A0B4J1V2 119 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 CTXND1A0A1B0GTU2 59 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 A0A1W2PPE2 198 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 IGLV2-23P01705 113 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 GNLYP22749 145 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 ZNF137PP52743 207 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 RAB11AP62491 216 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 DLK1P80370 383 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 MLANAQ16655 118 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 C10orf55Q5SWW7 151 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 MIC13Q5XKP0 118 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 TGIF2LXQ8IUE1 241 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 PLEKHA3Q9HB20 300 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 SMCO4Q9NRQ5 59 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 TPSG1Q9NRR2 321 aa11.71□□□□□ -0.53
VRK3-217ENST00000599538 SPTAN1Q13813 2472 aaKnown RBP11.71□□□□□ -0.53
VRK3-217ENST00000599538 PPIAL4CA0A0B4J2A2 164 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 C17orf112F2Z3M2 114 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 PPIAL4GP0DN37 164 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 WDR25Q64LD2 544 aaPredicted RBP11.71□□□□□ -0.54
VRK3-217ENST00000599538 OR4C13Q8NGP0 309 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 SSMEM1Q8WWF3 244 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 RAB1BQ9H0U4 201 aa11.71□□□□□ -0.54
VRK3-217ENST00000599538 LSM4Q9Y4Z0 139 aaKnown RBP11.71□□□□□ -0.54
VRK3-217ENST00000599538 CGB1A6NKQ9 187 aa11.7□□□□□ -0.54
VRK3-217ENST00000599538 C22orf46C9J442 243 aa11.7□□□□□ -0.54
VRK3-217ENST00000599538 NDUFS7O75251 213 aa11.7□□□□□ -0.54
VRK3-217ENST00000599538 IGLV1-47P01700 117 aa11.7□□□□□ -0.54
VRK3-217ENST00000599538 MBP02144 154 aa11.7□□□□□ -0.54
VRK3-217ENST00000599538 SFTPCP11686 197 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms