RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 OR5AP2Q8NGF4 316 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 OR51H1Q8NH63 302 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 CD300LFQ8TDQ1 290 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 CXorf58Q96LI9 332 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 CCDC140Q96MF4 163 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 FANCD2OSQ96PS1 177 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 COMMD5Q9GZQ3 224 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 AUNIPQ9H7T9 357 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 S4R3C0 116 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 TENM3Q9P273 2699 aa7.41□□□□□ -1.22
VRK3-216ENST00000599342 TRBV7-1A0A0A6YYK4 115 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 A0A1B0GW64 132 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 MEIS3P1A6NDR6 274 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 OR11H12B2RN74 326 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 CYB5BO43169 146 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 CD7P09564 240 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 MYOD1P15172 320 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 NQO2P16083 231 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 ERVK-16P61578 105 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 KCTD21Q4G0X4 260 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 ZNF818PQ6ZRF7 136 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 SLC16A13Q7RTY0 426 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 DEFB125Q8N687 156 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 GIMAP1Q8WWP7 306 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 WDR89Q96FK6 387 aaPredicted RBP7.4□□□□□ -1.22
VRK3-216ENST00000599342 S100A16Q96FQ6 103 aaKnown RBP7.4□□□□□ -1.22
VRK3-216ENST00000599342 SRD5A3Q9H8P0 318 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 ZC4H2Q9NQZ6 224 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 TMEM140Q9NV12 185 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 EHFQ9NZC4 300 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 THYN1Q9P016 225 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 DMRT1Q9Y5R6 373 aa7.4□□□□□ -1.22
VRK3-216ENST00000599342 NBEAL2Q6ZNJ1 2754 aa7.4□□□□□ -1.23
VRK3-216ENST00000599342 IGLV11-55A0A075B6I3 123 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 LCE6AA0A183 80 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 ZNF785A8K8V0 405 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 A8MWP6 167 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 UPK2O00526 184 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 XRCC3O43542 346 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 EDN2P20800 178 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 CBLN1P23435 193 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 OR2B8PP59922 312 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 POU2AF1Q16633 256 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 UBE2NLQ5JXB2 153 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 TMEM69Q5SWH9 247 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 ZNF57Q68EA5 555 aaPredicted RBP7.39□□□□□ -1.23
VRK3-216ENST00000599342 THOC7Q6I9Y2 204 aaKnown RBP7.39□□□□□ -1.23
VRK3-216ENST00000599342 CACNG8Q8WXS5 425 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 SRSF8Q9BRL6 282 aaKnown RBP7.39□□□□□ -1.23
VRK3-216ENST00000599342 QTRT1Q9BXR0 403 aaKnown RBP7.39□□□□□ -1.23
VRK3-216ENST00000599342 HIPK2Q9H2X6 1198 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 PLEKHA2Q9HB19 425 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 RETNQ9HD89 108 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 VCX3AQ9NNX9 186 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 COMMD9Q9P000 198 aa7.39□□□□□ -1.23
VRK3-216ENST00000599342 TNCP24821 2201 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 TRAV3A0A0B4J244 114 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 IGLC7A0M8Q6 106 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 TMEM213A2RRL7 107 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 MFSD2BA6NFX1 497 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 CGB1A6NKQ9 187 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 S1PR2O95136 353 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 RLN1P04808 185 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 CLEC3BP05452 202 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 FGF2P09038 288 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 GPR183P32249 361 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 TAS2R46P59540 309 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 KLK9Q2XQG4 91 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 ANKRD55Q3KP44 614 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 PLET1Q6UQ28 207 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 BTNL8Q6UX41 500 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 LINC00322Q6ZN03 302 aaPredicted RBP7.38□□□□□ -1.23
VRK3-216ENST00000599342 HSD17B13Q7Z5P4 300 aaPredicted RBP7.38□□□□□ -1.23
VRK3-216ENST00000599342 CMTM1Q8IZ96 169 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 TMEM61Q8N0U2 210 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 UXS1Q8NBZ7 420 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 TSPAN14Q8NG11 270 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 OR52B4Q8NGK2 314 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 OR5H2Q8NGV7 314 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 IL17DQ8TAD2 202 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 FAM110AQ9BQ89 295 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 ZNF2Q9BSG1 426 aaPredicted RBP7.38□□□□□ -1.23
VRK3-216ENST00000599342 WFDC10AQ9H1F0 79 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 KLK9Q9UKQ9 250 aa7.38□□□□□ -1.23
VRK3-216ENST00000599342 RBMY1BA6NDE4 496 aaKnown RBP7.37□□□□□ -1.23
VRK3-216ENST00000599342 RBMY1EA6NEQ0 496 aaKnown RBP7.37□□□□□ -1.23
VRK3-216ENST00000599342 MARCH11A6NNE9 402 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 SCAF4O95104 1147 aaKnown RBP7.37□□□□□ -1.23
VRK3-216ENST00000599342 PMP2P02689 132 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 RBMY1DP0C7P1 496 aaKnown RBP7.37□□□□□ -1.23
VRK3-216ENST00000599342 TRAPPC2P0DI81 140 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 TRAPPC2BP0DI82 140 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 RPA2P15927 270 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 GNRHRP30968 328 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 TGFBR1P36897 503 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 TAS2R20P59543 309 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 RBPMS2Q6ZRY4 209 aaKnown RBP7.37□□□□□ -1.23
VRK3-216ENST00000599342 SAMD12Q8N8I0 201 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 GDPD1Q8N9F7 314 aa7.37□□□□□ -1.23
VRK3-216ENST00000599342 ZNF502Q8TBZ5 544 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms