RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GPR31O00270 319 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 UPK2O00526 184 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 S1PR2O95136 353 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 CRYGCP07315 174 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 AREGP15514 252 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 F2RP25116 425 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 S100GP29377 79 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 LPCAT3Q6P1A2 487 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 HAPLN4Q86UW8 402 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 DGCR14Q96DF8 476 aaKnown RBP11.67□□□□□ -0.54
TRIM28-203ENST00000593582 FXYD6Q9H0Q3 95 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 FBXL7Q9UJT9 491 aa11.67□□□□□ -0.54
TRIM28-203ENST00000593582 MARCH11A6NNE9 402 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 BMPR1BO00238 502 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 FGF2P09038 288 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 MYOD1P15172 320 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 CTRB1P17538 263 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 OR2B8PP59922 312 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 CTRB2Q6GPI1 263 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 C19orf35Q6ZS72 473 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 PEMTQ9UBM1 199 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 SORL1Q92673 2214 aa11.66□□□□□ -0.54
TRIM28-203ENST00000593582 TRAV3A0A0B4J244 114 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 H0Y980 276 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 REG1AP05451 166 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 RPA2P15927 270 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 HIST1H1BP16401 226 aaKnown RBP11.65□□□□□ -0.54
TRIM28-203ENST00000593582 LPAR6P43657 344 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 ALDH3B2P48448 385 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 PHLDA2Q53GA4 152 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 IL34Q6ZMJ4 242 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 FCAMRQ8WWV6 532 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 FANCD2OSQ96PS1 177 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 SRSF8Q9BRL6 282 aaKnown RBP11.65□□□□□ -0.54
TRIM28-203ENST00000593582 QTRT1Q9BXR0 403 aaKnown RBP11.65□□□□□ -0.54
TRIM28-203ENST00000593582 SIGLEC8Q9NYZ4 499 aa11.65□□□□□ -0.54
TRIM28-203ENST00000593582 CGB1A6NKQ9 187 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 TPPPO94811 219 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 NDUFB8O95169 186 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 KRASP01116 189 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 IFNA6P05013 189 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 CSN3P07498 182 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 THOC7Q6I9Y2 204 aaKnown RBP11.64□□□□□ -0.55
TRIM28-203ENST00000593582 SLC38A6Q8IZM9 456 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 C15orf40Q8WUR7 153 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 ASCL2Q99929 193 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 EXTL2Q9UBQ6 330 aa11.64□□□□□ -0.55
TRIM28-203ENST00000593582 IGLC7A0M8Q6 106 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 PPP5D1E7EU14 171 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 M0QYG6 137 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 RGS5O15539 181 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 CYB5BO43169 146 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 GGCTO75223 188 aaKnown RBP11.63□□□□□ -0.55
TRIM28-203ENST00000593582 SNAPC5O75971 98 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 TRAPPC2P0DI81 140 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 TRAPPC2BP0DI82 140 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 UCP3P55916 312 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 KLK9Q2XQG4 91 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 RNASE12Q5GAN4 147 aaKnown RBP11.63□□□□□ -0.55
TRIM28-203ENST00000593582 HSD17B13Q7Z5P4 300 aaPredicted RBP11.63□□□□□ -0.55
TRIM28-203ENST00000593582 CADM3Q8N126 398 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 EEF1AKMT3Q96AZ1 226 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 WWC2-AS2Q96NR7 200 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 THYN1Q9P016 225 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 KLK11Q9UBX7 282 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 KLK9Q9UKQ9 250 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 U3KQK5 164 aa11.63□□□□□ -0.55
TRIM28-203ENST00000593582 IGLV11-55A0A075B6I3 123 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 IGHV3-23P01764 117 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 TBPP20226 339 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 G6PCP35575 357 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 ZNF585BQ52M93 769 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 RNASE10Q5GAN6 216 aaKnown RBP11.62□□□□□ -0.55
TRIM28-203ENST00000593582 LCN12Q6JVE5 192 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 CLEC19AQ6UXS0 136 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 TBC1D26Q86UD7 250 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 Q8N402 240 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 OR10W1Q8NGF6 305 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 OR1L8Q8NGR8 309 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 OR52I2Q8NH67 350 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 CXorf58Q96LI9 332 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 CCDC140Q96MF4 163 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 ABHD1Q96SE0 405 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 FAM212BQ9NTI7 297 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-203ENST00000593582 MTFP1Q9UDX5 166 aa11.62□□□□□ -0.55
TRIM28-203ENST00000593582 TRBV7-1A0A0A6YYK4 115 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 TEX50A0A1B0GTY4 177 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 OR2C1O95371 312 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 HLA-AP01891 365 aaKnown RBP11.61□□□□□ -0.55
TRIM28-203ENST00000593582 FRMD6-AS1P0C7T7 363 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 ARL3P36405 182 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 SPCS2Q15005 226 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 CLVS1Q8IUQ0 354 aaPredicted RBP11.61□□□□□ -0.55
TRIM28-203ENST00000593582 SGPP2Q8IWX5 399 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 RAB2BQ8WUD1 216 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 TSC22D3Q99576 134 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 HINT2Q9BX68 163 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 FKBP11Q9NYL4 201 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 PRNDQ9UKY0 176 aa11.61□□□□□ -0.55
TRIM28-203ENST00000593582 OR51B2Q9Y5P1 312 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms