RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ZNF502Q8TBZ5 544 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TCTEX1D2Q8WW35 142 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 EEF1AKMT3Q96AZ1 226 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF436Q9C0F3 470 aaPredicted RBP8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TAS2R8Q9NYW2 309 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 LOC102724200A0A096LPH7 203 aaPredicted RBP8.73□□□□□ -1.01
CLIP3-204ENST00000590559 SMIM30A4D0T7 59 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 DPPA5A6NC42 116 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 RBFOX2O43251 390 aaKnown RBP eCLIP8.73□□□□□ -1.01
CLIP3-204ENST00000590559 SCGNO76038 276 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 DHFRP00374 187 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 REG1AP05451 166 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 HLA-GP17693 338 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 UBE2UQ5VVX9 321 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 BTNL8Q6UX41 500 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 OR52B4Q8NGK2 314 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 MARC2Q969Z3 335 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 CXorf58Q96LI9 332 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 CCL28Q9NRJ3 127 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 TXNL4BQ9NX01 149 aaKnown RBP8.73□□□□□ -1.01
CLIP3-204ENST00000590559 MRPL27Q9P0M9 148 aaKnown RBP8.73□□□□□ -1.01
CLIP3-204ENST00000590559 TP53TG1Q9Y2A0 90 aa8.73□□□□□ -1.01
CLIP3-204ENST00000590559 TRAV3A0A0B4J244 114 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF320A2RRD8 509 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 MRPS14O60783 128 aaKnown RBP8.72□□□□□ -1.01
CLIP3-204ENST00000590559 SCAF4O95104 1147 aaKnown RBP8.72□□□□□ -1.01
CLIP3-204ENST00000590559 ATF4P18848 351 aaPredicted RBP8.72□□□□□ -1.01
CLIP3-204ENST00000590559 PTBP1P26599 531 aaKnown RBP eCLIP8.72□□□□□ -1.01
CLIP3-204ENST00000590559 ANKRD55Q3KP44 614 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 Q6ZWC4 215 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 SSX9Q7RTT3 188 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 TPRA1Q86W33 373 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF414Q96IQ9 312 aa8.72□□□□□ -1.01
CLIP3-204ENST00000590559 SRSF8Q9BRL6 282 aaKnown RBP8.72□□□□□ -1.01
CLIP3-204ENST00000590559 UPK2O00526 184 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 PTHLHP12272 177 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 TAS2R31P59538 309 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 GNG2P59768 71 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 GABARAPL2P60520 117 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 SFXN4Q6P4A7 337 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 HOGA1Q86XE5 327 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 SPAG16Q8N0X2 631 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 OR2C3Q8N628 320 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 GVQW1Q8N7I0 195 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 ZBTB34Q8NCN2 500 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 BEST4Q8NFU0 473 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 OR13F1Q8NGS4 319 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 LGALS14Q8TCE9 139 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 SLC25A38Q96DW6 304 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 CNBD2Q96M20 576 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 AIFM2Q9BRQ8 373 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 C5orf66Q9H5L9 145 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 RHBDL2Q9NX52 303 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 BLOC1S6Q9UL45 172 aa8.71□□□□□ -1.02
CLIP3-204ENST00000590559 A0A0J9YWU9 116 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 F8W735 103 aaPredicted RBP8.7□□□□□ -1.02
CLIP3-204ENST00000590559 TSPAN4O14817 238 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 TGOLN2O43493 480 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 TNFSF12O43508 249 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 HPRT1P00492 218 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 PPYP01298 95 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 DEFA4P12838 97 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 FCGR2CP31995 323 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 GPR183P32249 361 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 HSPA13P48723 471 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 SCAND1P57086 179 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 ODF3L2Q3SX64 289 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 ZNF585BQ52M93 769 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 IZUMO2Q6UXV1 221 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 LYG2Q86SG7 212 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 OR1L6Q8NGR2 347 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 OR5H6Q8NGV6 325 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 VN1R17PQ8TDU5 208 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 SECTM1Q8WVN6 248 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 TMEM190Q8WZ59 177 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 ATP6V0BQ99437 205 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 SPAG8Q99932 426 aaPredicted RBP8.7□□□□□ -1.02
CLIP3-204ENST00000590559 DAPK2Q9UIK4 370 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 UFC1Q9Y3C8 167 aa8.7□□□□□ -1.02
CLIP3-204ENST00000590559 DNAH2Q9P225 4427 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 SULT1C2O00338 296 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 SPRY2O43597 315 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 SERPINE2P07093 398 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 NQO2P16083 231 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 BMI1P35226 326 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 MFAP2P55001 183 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 WT1-ASQ06250 92 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 CEMP1Q6PRD7 247 aaPredicted RBP8.69□□□□□ -1.02
CLIP3-204ENST00000590559 ZNF818PQ6ZRF7 136 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 RBPMS2Q6ZRY4 209 aaKnown RBP8.69□□□□□ -1.02
CLIP3-204ENST00000590559 SPARTQ8N0X7 666 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 CADM3Q8N126 398 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 GDPD1Q8N9F7 314 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 OR10W1Q8NGF6 305 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 GIMAP1Q8WWP7 306 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 RNF183Q96D59 192 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 KRTAP17-1Q9BYP8 105 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 PLEKHA2Q9HB19 425 aa8.69□□□□□ -1.02
CLIP3-204ENST00000590559 RRP15Q9Y3B9 282 aaKnown RBP8.69□□□□□ -1.02
CLIP3-204ENST00000590559 FAT2Q9NYQ8 4349 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms