RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 MS4A5Q9H3V2 200 aa8.74□□□□□ -1.01
ZNF540-208ENST00000589857 SAP30LQ9HAJ7 183 aa8.74□□□□□ -1.01
ZNF540-208ENST00000589857 TCF19Q9Y242 345 aa8.74□□□□□ -1.01
ZNF540-208ENST00000589857 PPIAL4AQ9Y536 164 aa8.74□□□□□ -1.01
ZNF540-208ENST00000589857 SVILO95425 2214 aa8.74□□□□□ -1.01
ZNF540-208ENST00000589857 ITPR3Q14573 2671 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 PKDREJQ9NTG1 2253 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 HIVEP1P15822 2718 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 SAA2-SAA4A0A096LPE2 208 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 A0A1W2PPE2 198 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 ZNF727A8MUV8 499 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 F6UZH7 168 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 CLDN34H7C241 214 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 NDUFB3O43676 98 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 GYPAP02724 150 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 OPN1MWP04001 364 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 SAA2P0DJI9 122 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 OPN1MW2P0DN77 364 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 OPN1MW3P0DN78 364 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 FOSL1P15407 271 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 NDUFB7P17568 137 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 IL3RAP26951 378 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 VDAC2P45880 294 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 AKR1D1P51857 326 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 HABP2Q14520 560 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 RPL39P5Q59GN2 51 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 CT45A1Q5HYN5 189 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 CYP2G1PQ6ZSU1 146 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 MRPL41Q8IXM3 137 aaKnown RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 LINC00518Q8N0U6 118 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 LYG1Q8N1E2 194 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 FAM24BQ8N5W8 94 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 OR4A5Q8NH83 315 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 CT45A3Q8NHU0 189 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 OSR1Q8TAX0 266 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 RHOVQ96L33 236 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 CCL13Q99616 98 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 FOXC2Q99958 501 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 TMEM204Q9BSN7 226 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 NPVFQ9HCQ7 196 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 DYNLRB1Q9NP97 96 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 TMEM14BQ9NUH8 114 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 SLC25A10Q9UBX3 287 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-208ENST00000589857 RFNGQ9Y644 331 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 PDZD2O15018 2839 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 FREM1Q5H8C1 2179 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 ABCA2Q9BZC7 2435 aa8.73□□□□□ -1.01
ZNF540-208ENST00000589857 KBTBD11O94819 623 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 VENTXO95231 258 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 S100PP25815 95 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 NPY1RP25929 384 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 CHRNB4P30926 498 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 AKR1C3P42330 323 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 BSPH1Q075Z2 132 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 HNF4GQ14541 408 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SSX2Q16385 188 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 TMEM241Q24JQ0 296 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 FAM90A2PQ658T7 463 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 ACSM6Q6P461 480 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 HEPN1Q6WQI6 88 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SSX9Q7RTT3 188 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 RPP25LQ8N5L8 163 aaKnown RBP8.72□□□□□ -1.01
ZNF540-208ENST00000589857 DEFB108BQ8NET1 73 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SLC24A4Q8NFF2 622 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 OR5B3Q8NH48 314 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 VSTM2AQ8TAG5 236 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 RAB24Q969Q5 203 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 ZNF714Q96N38 554 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SMIM7Q9BQ49 75 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 TMUB1Q9BVT8 246 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 VSIRQ9H7M9 311 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SLC25A22Q9H936 323 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 PLEKHA3Q9HB20 300 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SDF2L1Q9HCN8 221 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 SLC35D1Q9NTN3 355 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 BET1LQ9NYM9 111 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 METTL1Q9UBP6 276 aaKnown RBP8.72□□□□□ -1.01
ZNF540-208ENST00000589857 RTTNQ86VV8 2226 aa8.72□□□□□ -1.01
ZNF540-208ENST00000589857 MED12LQ86YW9 2145 aa8.71□□□□□ -1.01
ZNF540-208ENST00000589857 CSMD2Q7Z408 3487 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 DNAJC13O75165 2243 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 MED13LQ71F56 2210 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 TRBV23-1A0A0A0MS06 115 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 DPRXA6NFQ7 191 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 B9A039 149 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 TMEM178BH3BS89 294 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 C19orf84I3L1E1 186 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 TMPRSS2O15393 492 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 PROP1O75360 226 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 RND2P52198 227 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 FGF8P55075 233 aaPredicted RBP8.71□□□□□ -1.02
ZNF540-208ENST00000589857 KRTAP10-9P60411 292 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 RPL31P62899 125 aaKnown RBP8.71□□□□□ -1.02
ZNF540-208ENST00000589857 TFF3Q07654 80 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 EFNB3Q15768 340 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 OR4A47Q6IF82 309 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 TGIF2LYQ8IUE0 185 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 LINC00311Q8N616 119 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 FAM216BQ8N7L0 139 aa8.71□□□□□ -1.02
ZNF540-208ENST00000589857 ISOC2Q96AB3 205 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms