RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	SRR	Q9GZT4	340 aa		10.29	□□□□□ -0.76
SS18-222	ENST00000582792	PEF1	Q9UBV8	284 aa	Known RBP	10.29	□□□□□ -0.76
SS18-222	ENST00000582792	RAB3D	O95716	219 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	IGLV2-14	P01704	120 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	TRBV12-3	P01733	135 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	APOA2	P02652	100 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	AKAIN1	P0CW23	69 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	DUT	P33316	252 aa	Known RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	MECP2	P51608	486 aa	Known RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	LINC00205	P59089	165 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	AP3S2	P59780	193 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	TSPAN5	P62079	268 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	EIF4EBP1	Q13541	118 aa	Predicted RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	RNASE12	Q5GAN4	147 aa	Known RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	LHFPL1	Q86WI0	220 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	ZNF383	Q8NA42	475 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	OR2K2	Q8NGT1	345 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	TRIM63	Q969Q1	353 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	TMEM68	Q96MH6	324 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	HSD17B10	Q99714	261 aa	Known RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	TINAGL1	Q9GZM7	467 aa	Predicted RBP	10.28	□□□□□ -0.76
SS18-222	ENST00000582792	SLC5A7	Q9GZV3	580 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	PLEKHA3	Q9HB20	300 aa		10.28	□□□□□ -0.76
SS18-222	ENST00000582792	DISC1	C4P0D8	188 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792		M0QYG6	137 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	OR2A4	O95047	310 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	CNIH1	O95406	144 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	CD81	P60033	236 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	DEFA5	Q01523	94 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	PJVK	Q0ZLH3	352 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	BVES	Q8NE79	360 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	SECTM1	Q8WVN6	248 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	S100Z	Q8WXG8	99 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	DDB2	Q92466	427 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	USMG5	Q96IX5	58 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	AKIP1	Q9NQ31	210 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792	SLC2A8	Q9NY64	477 aa		10.27	□□□□□ -0.77
SS18-222	ENST00000582792		J3QRK9	145 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	IGLV2-23	P01705	113 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	CRYGB	P07316	175 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	ZNF735	P0CB33	412 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	GNRHR	P30968	328 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	FAU	P35544	74 aa	Known RBP	10.26	□□□□□ -0.77
SS18-222	ENST00000582792	KIR2DS2	P43631	304 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	LGALS7	P47929	136 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	FXYD4	P59646	89 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	CBX3	Q13185	183 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	KLF9	Q13886	244 aa	Predicted RBP	10.26	□□□□□ -0.77
SS18-222	ENST00000582792	RPEL1	Q2QD12	228 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	AADACL3	Q5VUY0	350 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	SLC38A6	Q8IZM9	456 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	MFSD4A	Q8N468	514 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	TERB2	Q8NHR7	220 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	ZNF486	Q96H40	463 aa	Predicted RBP	10.26	□□□□□ -0.77
SS18-222	ENST00000582792	NEURL2	Q9BR09	285 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	KRTAP17-1	Q9BYP8	105 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	FXYD6	Q9H0Q3	95 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	CCL28	Q9NRJ3	127 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	SLC35D1	Q9NTN3	355 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	PEMT	Q9UBM1	199 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	PRELID3B	Q9Y3B1	194 aa		10.26	□□□□□ -0.77
SS18-222	ENST00000582792	FRAS1	Q86XX4	4008 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	GPR31	O00270	319 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	SURF2	Q15527	256 aa	Predicted RBP	10.25	□□□□□ -0.77
SS18-222	ENST00000582792	RTL8B	Q17RB0	113 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	TMEM177	Q53S58	311 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	CMTM1	Q8IZ96	169 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	TOMM5	Q8N4H5	51 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	OR4C16	Q8NGL9	310 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	PRRT1	Q99946	306 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	COA4	Q9NYJ1	87 aa		10.25	□□□□□ -0.77
SS18-222	ENST00000582792	RBMY1B	A6NDE4	496 aa	Known RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	RBMY1E	A6NEQ0	496 aa	Known RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	LINC00473	A8K010	186 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	RBMXL2	O75526	392 aa	Known RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	CD7	P09564	240 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	RBMY1D	P0C7P1	496 aa	Known RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	S100G	P29377	79 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	RND3	P61587	244 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	CATR1	Q13166	79 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	CD300E	Q496F6	205 aa	Predicted RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	ZNF818P	Q6ZRF7	136 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	KCTD9	Q7L273	389 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	DEFB125	Q8N687	156 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	OR4D10	Q8NGI6	311 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	OSR1	Q8TAX0	266 aa	Predicted RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	ZFAND1	Q8TCF1	268 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	LINC00476	Q8WZB0	136 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	SDHC	Q99643	169 aa	Predicted RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	CCDC32	Q9BV29	185 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.24	□□□□□ -0.77
SS18-222	ENST00000582792	SCP2D1	Q9UJQ7	156 aa		10.24	□□□□□ -0.77
SS18-222	ENST00000582792	ZNF785	A8K8V0	405 aa		10.23	□□□□□ -0.77
SS18-222	ENST00000582792	BMPR1B	O00238	502 aa		10.23	□□□□□ -0.77
SS18-222	ENST00000582792	RPL30	P62888	115 aa	Known RBP	10.23	□□□□□ -0.77
SS18-222	ENST00000582792	BAK1	Q16611	211 aa		10.23	□□□□□ -0.77
SS18-222	ENST00000582792	TRIQK	Q629K1	86 aa		10.23	□□□□□ -0.77
SS18-222	ENST00000582792	OR4S2	Q8NH73	311 aa		10.23	□□□□□ -0.77
SS18-222	ENST00000582792	CD300LF	Q8TDQ1	290 aa		10.23	□□□□□ -0.77

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