RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 OR52D1Q9H346 318 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 PARVAQ9NVD7 372 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 GID8Q9NWU2 228 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 VPS29Q9UBQ0 182 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 DKKL1Q9UK85 242 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 TIMM22Q9Y584 194 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 FSIP2Q5CZC0 6907 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 A0A1W2PP18 115 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 FAM168BA1KXE4 195 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 CLDN24A6NM45 220 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 H0YJX3 145 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 GYG2O15488 501 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 CYB5R3P00387 301 aaPredicted RBP3.97□□□□□ -1.77
VPS53-219ENST00000576019 ALOX5APP20292 161 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 HSPA13P48723 471 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 SULT1A1P50225 295 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 SULT1A2P50226 295 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 RAP1AP62834 184 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 SLC35A2P78381 396 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 IL17AQ16552 155 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 CENPWQ5EE01 88 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 TCTEX1D4Q5JR98 221 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 HIST2H3PS2Q5TEC6 136 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 RSBN1Q5VWQ0 802 aaPredicted RBP3.97□□□□□ -1.77
VPS53-219ENST00000576019 FAM131AQ6UXB0 335 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 OLIG3Q7RTU3 272 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 LINC00596Q86U02 117 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 OOSP2Q86WS3 158 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 ZNF584Q8IVC4 421 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 CLDN22Q8N7P3 220 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 EEF1AKMT1Q8WVE0 214 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 COX14Q96I36 57 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 NOX3Q9HBY0 568 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 PARP11Q9NR21 331 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 TAS2R5Q9NYW4 299 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 PAK5Q9P286 719 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 ZNF580Q9UK33 172 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 LSM5Q9Y4Y9 91 aaKnown RBP3.97□□□□□ -1.77
VPS53-219ENST00000576019 ZNF706Q9Y5V0 76 aaPredicted RBP3.97□□□□□ -1.77
VPS53-219ENST00000576019 V9GYQ6 96 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 VPS13DQ5THJ4 4388 aa3.97□□□□□ -1.77
VPS53-219ENST00000576019 A0A0G2JMP0 313 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 A0A0X1KG70 313 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 A0A1B0GX78 115 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 PSMD12O00232 456 aaPredicted RBP3.96□□□□□ -1.78
VPS53-219ENST00000576019 ANGPTL7O43827 346 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 IGKV3-20P01619 116 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 IL3P08700 152 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZNF708P17019 499 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZBTB25P24278 435 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 MIPP30301 263 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 GABRA4P48169 554 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 RWDD2BP57060 319 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 HPCAP84074 193 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 SSX1Q16384 188 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZNF684Q5T5D7 378 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZNF773Q6PK81 442 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 GSG1LQ6UXU4 331 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZNF550Q7Z398 422 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 C6orf120Q7Z4R8 191 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 FAM19A3Q7Z5A8 133 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 KRTAP7-1Q8IUC3 87 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 OR6V1Q8N148 313 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 TEX29Q8N6K0 151 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 MFSD8Q8NHS3 518 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 LINC01006Q8NI28 216 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 C15orf40Q8WUR7 153 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 PRRT1Q99946 306 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 EBPLQ9BY08 206 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 CA10Q9NS85 328 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 GLTPQ9NZD2 209 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 FBXO5Q9UKT4 447 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 POMPQ9Y244 141 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 POLR1DQ9Y2S0 133 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 WSB1Q9Y6I7 421 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 ZNF780BQ9Y6R6 833 aa3.96□□□□□ -1.78
VPS53-219ENST00000576019 LOC102724200A0A096LPH7 203 aaPredicted RBP3.95□□□□□ -1.78
VPS53-219ENST00000576019 OR5H1A6NKK0 313 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 KLLNB2CW77 178 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 TRIM49D1C9J1S8 452 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 H3BQV1 296 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 MAGEA12P43365 314 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 NAA20P61599 178 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 HIST3H3Q16695 136 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 MESTQ5EB52 335 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 FAM222AQ5U5X8 452 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 SFXN4Q6P4A7 337 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 TAC4Q86UU9 113 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 SLC51BQ86UW2 128 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 ZIC4Q8N9L1 334 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 PXT1Q8NFP0 134 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 OR1L1Q8NH94 360 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 NEK7Q8TDX7 302 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 ORAOV1Q8WV07 137 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 TAMM41Q96BW9 452 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 PHB2Q99623 299 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 TBL1XR1Q9BZK7 514 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 TXNIPQ9H3M7 391 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 C12orf10Q9HB07 376 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 PLSCR3Q9NRY6 295 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms