RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SRSF12Q8WXF0 261 aaKnown RBP16.16■□□□□ 0.18
VPS53-210ENST00000571456 RRNAD1Q96FB5 475 aaKnown RBP16.16■□□□□ 0.18
VPS53-210ENST00000571456 NOL4LQ96MY1 436 aaPredicted RBP16.16■□□□□ 0.18
VPS53-210ENST00000571456 COMMD5Q9GZQ3 224 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 ALX4Q9H161 411 aaPredicted RBP16.16■□□□□ 0.18
VPS53-210ENST00000571456 FAM240BA0A1B0GVZ2 78 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 DUXBA0A1W2PPF3 345 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 IGHG4P01861 327 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 G6PCP35575 357 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 AKR1C2P52895 323 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 GNB1P62873 340 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 NDPQ00604 133 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 CFHR3Q02985 330 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 PJVKQ0ZLH3 352 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 FOXE3Q13461 319 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 ZNF695Q8IW36 515 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 MINDY2Q8NBR6 621 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 ADAD2Q8NCV1 583 aaKnown RBP16.15■□□□□ 0.18
VPS53-210ENST00000571456 TBC1D24Q9ULP9 559 aa16.15■□□□□ 0.18
VPS53-210ENST00000571456 FOXA2Q9Y261 457 aaPredicted RBP16.15■□□□□ 0.18
VPS53-210ENST00000571456 H3BUA1 57 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 ARPC1BO15143 372 aaKnown RBP16.14■□□□□ 0.17
VPS53-210ENST00000571456 BRI3O95415 125 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 IGKV1-39P01597 117 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 IGKV1D-39P04432 117 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 PPIFP30405 207 aaKnown RBP16.14■□□□□ 0.17
VPS53-210ENST00000571456 RPL27AP46776 148 aaKnown RBP16.14■□□□□ 0.17
VPS53-210ENST00000571456 SSBP2P81877 361 aaPredicted RBP16.14■□□□□ 0.17
VPS53-210ENST00000571456 TMEM187Q14656 261 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 SP6Q3SY56 376 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 C19orf54Q5BKX5 351 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 UNQ5815/PRO19632Q6UWF5 114 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 LGI3Q8N145 548 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 RNF152Q8N8N0 203 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 OR5B3Q8NH48 314 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 GRPEL2Q8TAA5 225 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 LSM10Q969L4 123 aaKnown RBP16.14■□□□□ 0.17
VPS53-210ENST00000571456 PHB2Q99623 299 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 PALMDQ9NP74 551 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 ZFP57Q9NU63 452 aa16.14■□□□□ 0.17
VPS53-210ENST00000571456 TET2Q6N021 2002 aaPredicted RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 TCRBP04435 133 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 EGR2P11161 476 aaPredicted RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 RAB25P57735 213 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 SUPT4H1P63272 117 aaKnown RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 CD83Q01151 205 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 CXorf66Q5JRM2 361 aaPredicted RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 MRPL41Q8IXM3 137 aaKnown RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 LRTM2Q8N967 370 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 LFNGQ8NES3 379 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 OR4A16Q8NH70 328 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 RNASE11Q8TAA1 199 aaKnown RBP16.13■□□□□ 0.17
VPS53-210ENST00000571456 ENKURQ8TC29 256 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 C20orf85Q9H1P6 137 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 SLA2Q9H6Q3 261 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 ZNF257Q9Y2Q1 563 aa16.13■□□□□ 0.17
VPS53-210ENST00000571456 A0A0B4J2A0 478 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 SFT2D2O95562 160 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 IGLV1-40P01703 118 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 ECSCRQ19T08 205 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 ZNF429Q86V71 674 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 NDUFA11Q86Y39 141 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 OR1L8Q8NGR8 309 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 SHPKQ9UHJ6 478 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 LINC00527Q9UJ94 153 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 FBXO7Q9Y3I1 522 aa16.12■□□□□ 0.17
VPS53-210ENST00000571456 MSGN1A6NI15 193 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 C15orf61A6NNL5 157 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 P0C879 139 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 VAMP1P23763 118 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 PSMB8P28062 276 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 TMEM268Q5VZI3 342 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 TMEM65Q6PI78 240 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 ZNF329Q86UD4 541 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 SELENOHQ8IZQ5 122 aaKnown RBP16.11■□□□□ 0.17
VPS53-210ENST00000571456 TMEM14BQ9NUH8 114 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 TSSC4Q9Y5U2 329 aaPredicted RBP16.11■□□□□ 0.17
VPS53-210ENST00000571456 WSB1Q9Y6I7 421 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 NOTCH3Q9UM47 2321 aa16.11■□□□□ 0.17
VPS53-210ENST00000571456 G3V318 75 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 DHFRP00374 187 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 IGKV1-5P01602 117 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 MECP2P51608 486 aaKnown RBP16.1■□□□□ 0.17
VPS53-210ENST00000571456 IFITM3Q01628 133 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 PPP1R1AQ13522 171 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 BEAN1Q3B7T3 259 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 DUSP18Q8NEJ0 188 aa16.1■□□□□ 0.17
VPS53-210ENST00000571456 FAM110DQ8TAY7 271 aaPredicted RBP16.1■□□□□ 0.17
VPS53-210ENST00000571456 FAM103A1Q9BTL3 118 aaKnown RBP16.1■□□□□ 0.17
VPS53-210ENST00000571456 QTRT1Q9BXR0 403 aaKnown RBP16.1■□□□□ 0.17
VPS53-210ENST00000571456 COL7A1Q02388 2944 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 A0A1W2PN81 502 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 TCRBV4S1A1TA0A5B7 111 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 TSPAN15O95858 294 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 HLA-AP01891 365 aaKnown RBP16.09■□□□□ 0.17
VPS53-210ENST00000571456 OR4E1P0C645 316 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 OR9G9P0C7N8 305 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 CD28P10747 220 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 CHRNA7P36544 502 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 OR2B8PP59922 312 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms