RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 GABARAPO95166 117 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 IGHV3-23P01764 117 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 AREGP15514 252 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 CBLN1P23435 193 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 PSMB6P28072 239 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 ARL3P36405 182 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 GNG2P59768 71 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 KLK9Q2XQG4 91 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 CLEC19AQ6UXS0 136 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 ZNF66Q6ZN08 573 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 CROCCP3Q8IVE0 287 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 MFSD4AQ8N468 514 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 TAS2R8Q9NYW2 309 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 ANXA10Q9UJ72 324 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 KLK9Q9UKQ9 250 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 S4R3C0 116 aa11.21□□□□□ -0.61
CLN3-228ENST00000567804 TMEM213A2RRL7 107 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 A8MWP6 167 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 SCGNO76038 276 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 DHFRP00374 187 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 CTRB1P17538 263 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 CTRB2Q6GPI1 263 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 SLC16A13Q7RTY0 426 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 TMEM61Q8N0U2 210 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 EEF1AKMT3Q96AZ1 226 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 GPHA2Q96T91 129 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 SELENOKQ9Y6D0 94 aa11.2□□□□□ -0.62
CLN3-228ENST00000567804 TMEM127O75204 238 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 HRASP01112 189 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 MYOD1P15172 320 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 HIST1H1BP16401 226 aaKnown RBP11.19□□□□□ -0.62
CLN3-228ENST00000567804 RPL8P62917 257 aaKnown RBP11.19□□□□□ -0.62
CLN3-228ENST00000567804 FAM106AQ4KMX7 169 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 UBE2NLQ5JXB2 153 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 ZNF57Q68EA5 555 aaPredicted RBP11.19□□□□□ -0.62
CLN3-228ENST00000567804 SSX9Q7RTT3 188 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 GVQW1Q8N7I0 195 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 SAMD12Q8N8I0 201 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 AUNIPQ9H7T9 357 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 MLXQ9UH92 298 aa11.19□□□□□ -0.62
CLN3-228ENST00000567804 IGLV11-55A0A075B6I3 123 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 A0A0A6YYH2 397 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 ZNF320A2RRD8 509 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 A6NJ64 397 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 CGB1A6NKQ9 187 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 EIF4EP06730 217 aaKnown RBP11.18□□□□□ -0.62
CLN3-228ENST00000567804 FCER2P06734 321 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 HLA-GP17693 338 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 MSMO1Q15800 293 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 OR4A47Q6IF82 309 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 GPR141Q7Z602 305 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 UXS1Q8NBZ7 420 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 OR52B4Q8NGK2 314 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 DIABLOQ9NR28 239 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 CCL28Q9NRJ3 127 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 BET1LQ9NYM9 111 aa11.18□□□□□ -0.62
CLN3-228ENST00000567804 TRBV7-1A0A0A6YYK4 115 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 MEIS3P1A6NDR6 274 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 MFSD2BA6NFX1 497 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 TNFSF12O43508 249 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 XRCC3O43542 346 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 REG1AP05451 166 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 ARPC4P59998 168 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 BTNL8Q6UX41 500 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 BEST4Q8NFU0 473 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 OR4A5Q8NH83 315 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 SECTM1Q8WVN6 248 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 COMMD3Q9UBI1 195 aa11.17□□□□□ -0.62
CLN3-228ENST00000567804 SCAF4O95104 1147 aaKnown RBP11.16□□□□□ -0.62
CLN3-228ENST00000567804 DEFA4P12838 97 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 FCGR2CP31995 323 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 SPCS2Q15005 226 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 TM4SF20Q53R12 229 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 UNQ9165/PRO28630Q6UXU0 137 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 SPAG16Q8N0X2 631 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 ZBTB34Q8NCN2 500 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 S100A16Q96FQ6 103 aaKnown RBP11.16□□□□□ -0.62
CLN3-228ENST00000567804 CXorf58Q96LI9 332 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 OVOL2Q9BRP0 275 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 AIFM2Q9BRQ8 373 aa11.16□□□□□ -0.62
CLN3-228ENST00000567804 LOC102724200A0A096LPH7 203 aaPredicted RBP11.15□□□□□ -0.62
CLN3-228ENST00000567804 TRAV25A0A0B4J276 109 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 IGLC7A0M8Q6 106 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 RBFOX2O43251 390 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN3-228ENST00000567804 HPGDSO60760 199 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 PPYP01298 95 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 CLEC3BP05452 202 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 C8orf88P0DMB2 117 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 RORCP51449 518 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 TAS2R31P59538 309 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 TAS2R20P59543 309 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 OR2B8PP59922 312 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 POU2AF1Q16633 256 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 ANKRD55Q3KP44 614 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 TMEM69Q5SWH9 247 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 HOGA1Q86XE5 327 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 CLVS1Q8IUQ0 354 aaPredicted RBP11.15□□□□□ -0.62
CLN3-228ENST00000567804 ZNF502Q8TBZ5 544 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 MARC2Q969Z3 335 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms