RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 IGHV3-23P01764 117 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 HIST1H1BP16401 226 aaKnown RBP15.78■□□□□ 0.12
CLN3-219ENST00000565778 CTRB1P17538 263 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 HRH1P35367 487 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 TSPAN5P62079 268 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 POU2AF1Q16633 256 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 CTRB2Q6GPI1 263 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 SNX29P2Q8IUI4 249 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 CMTM1Q8IZ96 169 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 CGB1A6NKQ9 187 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 HPGDSO60760 199 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 GGCTO75223 188 aaKnown RBP15.77■□□□□ 0.12
CLN3-219ENST00000565778 OR2C1O95371 312 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 HLA-AP01891 365 aaKnown RBP15.77■□□□□ 0.12
CLN3-219ENST00000565778 RLN1P04808 185 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 IGHV4-30-4P0DP06 118 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 ELK1P19419 428 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 F2RP25116 425 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 OR2B8PP59922 312 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 ERVK-16P61578 105 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 LCN12Q6JVE5 192 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 CLEC19AQ6UXS0 136 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 SGPP2Q8IWX5 399 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 GPX8Q8TED1 209 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 TMEM140Q9NV12 185 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 S4R3C0 116 aa15.77■□□□□ 0.12
CLN3-219ENST00000565778 FAM25AB3EWG3 89 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 FAM25CB3EWG5 89 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 FAM25GB3EWG6 89 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 LPAR6P43657 344 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 MZT2AQ6P582 158 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 Q8N402 240 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 EEF1AKMT3Q96AZ1 226 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 DGCR14Q96DF8 476 aaKnown RBP15.76■□□□□ 0.11
CLN3-219ENST00000565778 ZMAT4Q9H898 229 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 SCPEP1Q9HB40 452 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 COMMD9Q9P000 198 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 DMRT1Q9Y5R6 373 aa15.76■□□□□ 0.11
CLN3-219ENST00000565778 GPR31O00270 319 aa15.75■□□□□ 0.11
CLN3-219ENST00000565778 LPCAT3Q6P1A2 487 aa15.75■□□□□ 0.11
CLN3-219ENST00000565778 GTSCR1Q86UQ5 136 aa15.75■□□□□ 0.11
CLN3-219ENST00000565778 RCHY1Q96PM5 261 aa15.75■□□□□ 0.11
CLN3-219ENST00000565778 NAA50Q9GZZ1 169 aaKnown RBP15.75■□□□□ 0.11
CLN3-219ENST00000565778 IZUMO1RA6ND01 250 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 KRASP01116 189 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 S100GP29377 79 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 ARL3P36405 182 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 MECP2P51608 486 aaKnown RBP15.74■□□□□ 0.11
CLN3-219ENST00000565778 GPR107Q5VW38 600 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 FCAMRQ8WWV6 532 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 QTRT1Q9BXR0 403 aaKnown RBP15.74■□□□□ 0.11
CLN3-219ENST00000565778 FXYD6Q9H0Q3 95 aa15.74■□□□□ 0.11
CLN3-219ENST00000565778 TRBV7-1A0A0A6YYK4 115 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 TEX50A0A1B0GTY4 177 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 MARCH11A6NNE9 402 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 TRAPPC2P0DI81 140 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 TRAPPC2BP0DI82 140 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 RCVRNP35243 200 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 KLK9Q2XQG4 91 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 FAM106AQ4KMX7 169 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 PHLDA2Q53GA4 152 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 GPHB5Q86YW7 130 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 OR10W1Q8NGF6 305 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 OR2K2Q8NGT1 345 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 DYNLRB2Q8TF09 96 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 AP3S1Q92572 193 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 CXorf58Q96LI9 332 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 CCDC140Q96MF4 163 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 SRSF8Q9BRL6 282 aaKnown RBP15.73■□□□□ 0.11
CLN3-219ENST00000565778 C19orf73Q9NVV2 129 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 THYN1Q9P016 225 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 KLK9Q9UKQ9 250 aa15.73■□□□□ 0.11
CLN3-219ENST00000565778 IGLV11-55A0A075B6I3 123 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 IGLC7A0M8Q6 106 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 ZNF320A2RRD8 509 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 A8MZ25 164 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 CYB5BO43169 146 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 SNAPC5O75971 98 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 CLEC3BP05452 202 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 FGF2P09038 288 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 SMIM18P0DKX4 95 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 ZNF182P17025 639 aaPredicted RBP15.72■□□□□ 0.11
CLN3-219ENST00000565778 G6PCP35575 357 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 CTF1Q16619 201 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 ZNF585BQ52M93 769 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 ADAMTSL5Q6ZMM2 481 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 OR1L8Q8NGR8 309 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 HINT2Q9BX68 163 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 TUBA4BQ9H853 241 aa15.72■□□□□ 0.11
CLN3-219ENST00000565778 C2orf70A6NJV1 201 aa15.71■□□□□ 0.11
CLN3-219ENST00000565778 LGALS9O00182 355 aa15.71■□□□□ 0.11
CLN3-219ENST00000565778 OR13C7P0DN81 318 aa15.71■□□□□ 0.11
CLN3-219ENST00000565778 FOLR2P14207 255 aa15.71■□□□□ 0.11
CLN3-219ENST00000565778 CD300EQ496F6 205 aaPredicted RBP15.71■□□□□ 0.11
CLN3-219ENST00000565778 RNASE12Q5GAN4 147 aaKnown RBP15.71■□□□□ 0.11
CLN3-219ENST00000565778 NSG2Q9Y328 171 aa15.71■□□□□ 0.11
CLN3-219ENST00000565778 MFSD2BA6NFX1 497 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 GABARAPO95166 117 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 DEFB114Q30KQ6 69 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 THOC7Q6I9Y2 204 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms