RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PSMB3P49720 205 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 DUSP3P51452 185 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 CEBPGP53567 150 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 FGF8P55075 233 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 TAS2R60P59551 318 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 RPL15P61313 204 aaKnown RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 PPP1CBP62140 327 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 RPS18P62269 152 aaKnown RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 TFF3Q07654 80 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 CATR1Q13166 79 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 P2RY6Q15077 328 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 ADIRFQ15847 76 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 SSX2Q16385 188 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 TMEM241Q24JQ0 296 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 HLA-BQ31612 363 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 PDLIM3Q53GG5 364 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 ZNF766Q5HY98 468 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 TCEAL6Q6IPX3 200 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 SLC25A24Q6NUK1 477 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 LCN15Q6UWW0 184 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 SSX9Q7RTT3 188 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 P4HA3Q7Z4N8 544 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 BATF2Q8N1L9 274 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 C17orf78Q8N4C9 275 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 GBGT1Q8N5D6 347 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 ZNF645Q8N7E2 425 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 WDR31Q8NA23 367 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 OR1K1Q8NGR3 316 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 RNASE11Q8TAA1 199 aaKnown RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 CT55Q8WUE5 264 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 RDH5Q92781 318 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 BCL2L2Q92843 193 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 C11orf52Q96A22 123 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 APH1AQ96BI3 265 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 S100PBPQ96BU1 408 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 BTF3L4Q96K17 158 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 ZNF488Q96MN9 340 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 NOL4LQ96MY1 436 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 CIB3Q96Q77 187 aaPredicted RBP2.02□□□□□ -2.09
SPG11-223ENST00000560858 TAAR6Q96RI8 345 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 IMMP2LQ96T52 175 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 TXNDC17Q9BRA2 123 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 DDA1Q9BW61 102 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 RTL8AQ9BWD3 113 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 NPCDR1Q9BY65 106 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 PRRG4Q9BZD6 226 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 GFRA4Q9GZZ7 299 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 UFSP2Q9NUQ7 469 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 OR6C3Q9NZP0 311 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 LRFN1Q9P244 771 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 B4GALT7Q9UBV7 327 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 KCNS2Q9ULS6 477 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 GAB2Q9UQC2 676 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 WDR83OSQ9Y284 106 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 ARL2-SNX15V9GYD0 113 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 CDH23Q9H251 3354 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 PRR14LQ5THK1 2151 aa2.02□□□□□ -2.09
SPG11-223ENST00000560858 SDK1Q7Z5N4 2213 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 INTS1Q8N201 2190 aaKnown RBP2.01□□□□□ -2.09
SPG11-223ENST00000560858 TRBV20OR9-2A0A075B6H5 130 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 TRGV8A0A0C4DH27 118 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 A0A1B0GV90 55 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 A0A1W2PPQ1 181 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 TMEM30CPA0ZSE6 113 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 XKRY2A2RUG3 117 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 OOEPA6NGQ2 149 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 C9JCJ5 164 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 C12orf77C9JDV5 145 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 C11orf94C9JXX5 98 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 FNDC10F2Z333 226 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 C17orf112F2Z3M2 114 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 F6UZH7 168 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 SIRPB1O00241 398 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 HS3ST1O14792 307 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 RBFOX2O43251 390 aaKnown RBP eCLIP2.01□□□□□ -2.09
SPG11-223ENST00000560858 PDE6DO43924 150 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 ZG16O60844 167 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 RAMP3O60896 148 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 WDR1O75083 606 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 MPDU1O75352 247 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 S1PR2O95136 353 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CLDN1O95832 211 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 HAND1O96004 215 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 IGHV3-9P01782 118 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 HBZP02008 142 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 ZNF883P0CG24 379 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 STAG3L2P0CL84 134 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 STAG3L3P0CL85 134 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 ESDP10768 282 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CCL2P13500 99 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 SELEP16581 610 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 COX5AP20674 150 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CA6P23280 308 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 NPPCP23582 126 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 ACP1P24666 158 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 IL3RAP26951 378 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CD1BP29016 333 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 OTX2P32243 289 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CYB561P49447 251 aa2.01□□□□□ -2.09
SPG11-223ENST00000560858 CNN1P51911 297 aaKnown RBP2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms