RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DEFA6Q01524 100 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 K7EM74 188 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 MLANAQ16655 118 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 DIRC2Q96SL1 478 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 JPT1Q9UK76 154 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 PTPRZ1P23471 2315 aaPredicted RBP10.6□□□□□ -0.71
LDLR-207ENST00000558013 YPEL1O60688 119 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 ACTL6BO94805 426 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 FRMD6-AS1P0C7T7 363 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 GATA2P23769 480 aaPredicted RBP10.6□□□□□ -0.71
LDLR-207ENST00000558013 ERVK-16P61578 105 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 LYG1Q8N1E2 194 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 TCTEX1D1Q8N7M0 179 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 YPEL2Q96QA6 119 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 ABCA1O95477 2261 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 ZNF320A2RRD8 509 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 ZNF705GA8MUZ8 300 aaPredicted RBP10.6□□□□□ -0.71
LDLR-207ENST00000558013 NUPR1O60356 82 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 OR4A47Q6IF82 309 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 IGFL2Q6UWQ7 119 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 FAM216BQ8N7L0 139 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 LINC00469Q8N7U9 141 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 DDB2Q92466 427 aa10.6□□□□□ -0.71
LDLR-207ENST00000558013 PLXNB1O43157 2135 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 ASH1LQ9NR48 2969 aaKnown RBP10.59□□□□□ -0.71
LDLR-207ENST00000558013 GGCTO75223 188 aaKnown RBP10.59□□□□□ -0.71
LDLR-207ENST00000558013 IGKV1-16P04430 117 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 CD33P20138 364 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 LURAP1LQ8IV03 231 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 CCL13Q99616 98 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 CA2P00918 260 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 FAM27E3Q08E93 113 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 HLA-DRB5Q30154 266 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 ACTL10Q5JWF8 245 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 TMEM256Q8N2U0 113 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 SGMS2Q8NHU3 365 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 OCC1Q8TAD7 63 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 FAM215AQ9Y5M1 114 aa10.59□□□□□ -0.71
LDLR-207ENST00000558013 NAV3Q8IVL0 2385 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 F2RL2O00254 374 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 SLC17A3O00476 420 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 IL6RP08887 468 aaPredicted RBP10.58□□□□□ -0.72
LDLR-207ENST00000558013 CGB3P0DN86 165 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 CGB7P0DN87 165 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 IGFBP2P18065 325 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 OPRK1P41145 380 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 KLF3P57682 345 aaPredicted RBP10.58□□□□□ -0.72
LDLR-207ENST00000558013 AARDQ4LEZ3 155 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 ASPHD1Q5U4P2 390 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 RND1Q92730 232 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 ANAPC16Q96DE5 110 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 A0A1B0GWJ7 208 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 SRRM4A7MD48 611 aaKnown RBP10.58□□□□□ -0.72
LDLR-207ENST00000558013 TGOLN2O43493 480 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 STAG3L2P0CL84 134 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 STAG3L3P0CL85 134 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 EFNB3Q15768 340 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 STPG3Q8N7X2 389 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 LHBP01229 141 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 DDTP30046 118 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 ZNF664Q8N3J9 261 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 ZCCHC14Q8WYQ9 949 aaKnown RBP10.58□□□□□ -0.72
LDLR-207ENST00000558013 GCM1Q9NP62 436 aa10.58□□□□□ -0.72
LDLR-207ENST00000558013 LSM4Q9Y4Z0 139 aaKnown RBP10.58□□□□□ -0.72
LDLR-207ENST00000558013 A0A087X0M5 115 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 A0A1B0GX30 115 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 GRIFINA4D1Z8 144 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 PDE6DO43924 150 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 VENTXO95231 258 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 JOSD1Q15040 202 aaPredicted RBP10.57□□□□□ -0.72
LDLR-207ENST00000558013 PIP4P1Q86T03 277 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 SFRP2Q96HF1 295 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 IMMP2LQ96T52 175 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 APC2O95996 2303 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 DSCAML1Q8TD84 2053 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 C15orf61A6NNL5 157 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 K7EN84 100 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 RPL31P62899 125 aaKnown RBP10.57□□□□□ -0.72
LDLR-207ENST00000558013 MRPS11P82912 194 aaKnown RBP10.57□□□□□ -0.72
LDLR-207ENST00000558013 PAX5Q02548 391 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 OR4P4Q8NGL7 312 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 FAM216AQ8WUB2 273 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 KCNIP2Q9NS61 270 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 IDI2-AS1Q9NZ38 188 aa10.57□□□□□ -0.72
LDLR-207ENST00000558013 IGKV1OR2-108A0A075B7D4 117 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 KBTBD11-OT1A0A1B0GTJ5 212 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 NPY1RP25929 384 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 RPL15P61313 204 aaKnown RBP10.56□□□□□ -0.72
LDLR-207ENST00000558013 OR5I1Q13606 314 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 CR1LQ2VPA4 569 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 TRAT1Q6PIZ9 186 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 MIR17HGQ75NE6 70 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 SLC24A4Q8NFF2 622 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 ZGRF1Q86YA3 2104 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 A0A1B0GV90 55 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 SNRPCP09234 159 aaKnown RBP10.56□□□□□ -0.72
LDLR-207ENST00000558013 TIMP3P35625 211 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 CCL8P80075 99 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 OR4S2Q8NH73 311 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 RAB1CQ92928 201 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms