RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 OPTNQ96CV9 577 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 TMA16Q96EY4 203 aaKnown RBP0.84□□□□□ -2.27
SCFD1-218ENST00000556256 DIRAS2Q96HU8 199 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 NAA38Q9BRA0 125 aaKnown RBP0.84□□□□□ -2.27
SCFD1-218ENST00000556256 DOHHQ9BU89 302 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 SPZ1Q9BXG8 430 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 MRPL32Q9BYC8 188 aaKnown RBP0.84□□□□□ -2.27
SCFD1-218ENST00000556256 CHST6Q9GZX3 395 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 FKBP14Q9NWM8 211 aa0.84□□□□□ -2.27
SCFD1-218ENST00000556256 RSL24D1Q9UHA3 163 aaKnown RBP0.84□□□□□ -2.27
SCFD1-218ENST00000556256 SIPA1L1O43166 1804 aa0.84□□□□□ -2.28
SCFD1-218ENST00000556256 FN1P02751 2386 aaKnown RBP0.84□□□□□ -2.28
SCFD1-218ENST00000556256 TRAV38-1A0A0B4J264 116 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 HMSDA8MTL9 139 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 INMT-MINDY4F8WBC2 141 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 TRAPPC2LH3BP13 241 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 TGOLN2O43493 480 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 MSMBP08118 114 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 FAM228BP0C875 321 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 FGF6P10767 208 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 GPX2P18283 190 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 CCR7P32248 378 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 AQP4P55087 323 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 MAGOHP61326 146 aaKnown RBP0.83□□□□□ -2.28
SCFD1-218ENST00000556256 HIST1H4AP62805 103 aaKnown RBP0.83□□□□□ -2.28
SCFD1-218ENST00000556256 FABP9Q0Z7S8 132 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 C1orf158Q8N1D5 194 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 DDI1Q8WTU0 396 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 Q96M85 177 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 OR51I1Q9H343 314 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 NAT8Q9UHE5 227 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 ANGPT4Q9Y264 503 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 NOSIPQ9Y314 301 aaKnown RBP0.83□□□□□ -2.28
SCFD1-218ENST00000556256 TIMM22Q9Y584 194 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 FLT4P35916 1363 aa0.83□□□□□ -2.28
SCFD1-218ENST00000556256 SMARCA4P51532 1647 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 I3L521 148 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 C1QAP02745 245 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 KRT7P08729 469 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 SRP19P09132 144 aaKnown RBP0.82□□□□□ -2.28
SCFD1-218ENST00000556256 UCHL3P15374 230 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 MSNP26038 577 aaKnown RBP0.82□□□□□ -2.28
SCFD1-218ENST00000556256 CSN1S1P47710 185 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 RAB13P51153 203 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 OR4D2P58180 307 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 CAV1Q03135 178 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 MOGQ16653 247 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 Q1T7F1 81 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 COQ5Q5HYK3 327 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 FAM27BQ5VT28 67 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 SLC36A1Q7Z2H8 476 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 TBC1D19Q8N5T2 526 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 TMEM86BQ8N661 226 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 ACOT12Q8WYK0 555 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 ANKRD7Q92527 254 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 RETNLBQ9BQ08 111 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 EVC2Q86UK5 1308 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 KIAA2026Q5HYC2 2103 aa0.82□□□□□ -2.28
SCFD1-218ENST00000556256 RP1L1Q8IWN7 2480 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 MEIKINA0A087WXM9 373 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 IGKV2-29A2NJV5 120 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 F8W036 122 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 DCTN3O75935 186 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 PPBPP02775 128 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 OR5G3P0C626 314 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 HLA-DMBP28068 263 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 S100A7P31151 101 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 AKR1C3P42330 323 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 MAGEA12P43365 314 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 AP2S1P53680 142 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 KRTAP10-4P60372 401 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 PMAIP1Q13794 54 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 ARHGAP11BQ3KRB8 267 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 FP248Q71RG6 208 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 CNBD2Q96M20 576 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 CISHQ9NSE2 258 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 PAQR5Q9NXK6 330 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-218ENST00000556256 FUT9Q9Y231 359 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 MALRD1Q5VYJ5 2156 aa0.81□□□□□ -2.28
SCFD1-218ENST00000556256 TRBV6-5A0A0K0K1A5 114 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 TRBV10-2A0A0K0K1G8 114 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 TRAPPC13A5PLN9 417 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 MEIS3P1A6NDR6 274 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 IBA57-AS1B1ANH7 110 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 IGHV3-7P01780 117 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 ARL14EPLP0DKL9 152 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 SULT1A3P0DMM9 295 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 SULT1A4P0DMN0 295 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 LYNX1P0DP58 116 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 KCNE1P15382 129 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 NKX2-5P52952 324 aaPredicted RBP0.8□□□□□ -2.28
SCFD1-218ENST00000556256 TCL1AP56279 114 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 CCL20P78556 96 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 RPL18Q07020 188 aaKnown RBP0.8□□□□□ -2.28
SCFD1-218ENST00000556256 OR2F1Q13607 317 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 NNATQ16517 81 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 HIST3H3Q16695 136 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 GUK1Q16774 197 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 C9orf64Q5T6V5 341 aa0.8□□□□□ -2.28
SCFD1-218ENST00000556256 GLT8D1Q68CQ7 371 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms