RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IGHV3-43DP0DP04 118 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ESDP10768 282 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CD46P15529 392 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 S100A7P31151 101 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 RPL31P62899 125 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SSPNQ14714 243 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ETFRF1Q6IPR1 90 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 Q6ZN92 141 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SPATA12Q7Z6I5 190 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 NIT1Q86X76 327 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 C1orf174Q8IYL3 243 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SSMEM1Q8WWF3 244 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ZC2HC1AQ96GY0 325 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 QTRT1Q9BXR0 403 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 RNASE7Q9H1E1 156 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 GP6Q9HCN6 339 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SH2D2AQ9NP31 389 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 LAMTOR2Q9Y2Q5 125 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 WIPI2Q9Y4P8 454 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CEP192Q8TEP8 1941 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 PTPRBP23467 1997 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 COL6A6A6NMZ7 2263 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CRYABP02511 175 aaKnown RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 C3orf79P0CE67 100 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 CD99P14209 185 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 RAC2P15153 192 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 MEOX1P50221 254 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 LGALS4P56470 323 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 Q0VFX4 171 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 UTF1Q5T230 341 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF497Q6ZNH5 498 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 DOLPP1Q86YN1 238 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 UBALD2Q8IYN6 164 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 KIR3DL3Q8N743 410 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 FAM122AQ96E09 287 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 LIN7CQ9NUP9 197 aaKnown RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 CACNA1BQ00975 2339 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TRAV3A0A0B4J244 114 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 KLRC4-KLRK1H3BQV0 150 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 WNT9BO14905 357 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 OR9G9P0C7N8 305 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 AMTP48728 403 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 GNG3P63215 75 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 PAFAH1B2P68402 229 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 EIF4EBP1Q13541 118 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 VWC2Q2TAL6 325 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TREML4Q6UXN2 200 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 MMD2Q8IY49 270 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM251Q8N6I4 163 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 SIGLECL1Q8N7X8 197 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 NANOS1Q8WY41 292 aaKnown RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 NEUROG1Q92886 237 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 STARD4Q96DR4 205 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 GMPPAQ96IJ6 420 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TRIB1Q96RU8 372 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 MGST2Q99735 147 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 DCTN5Q9BTE1 182 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TTTY12Q9BZ98 90 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 SLC45A2Q9UMX9 530 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 RNF24Q9Y225 148 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 SELENOKQ9Y6D0 94 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 V9GYV3 84 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TRBV6-6A0A0A6YYG2 114 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 C20orf202A1L168 122 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 NKX6-3A6NJ46 265 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 PDE6DO43924 150 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 TIMM8AO60220 97 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-214ENST00000552783 PROP1O75360 226 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 NEURL1O76050 574 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 CD1BP29016 333 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 RNF151Q2KHN1 245 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF718Q3SXZ3 478 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF826PQ6ZT77 177 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ABHD12Q8N2K0 398 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 Q8TCH9 128 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 FAM168AQ92567 244 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ST6GALNAC6Q969X2 333 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 POM121L2Q96KW2 1035 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 KCNIP2Q9NS61 270 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 IL36BQ9NZH7 164 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 GNG12Q9UBI6 72 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 SH3BGRL2Q9UJC5 107 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF391Q9UJN7 358 aa4.03□□□□□ -1.76
LIMA1-214ENST00000552783 KMT2EQ8IZD2 1858 aa4.03□□□□□ -1.77
LIMA1-214ENST00000552783 WNK2Q9Y3S1 2297 aa4.03□□□□□ -1.77
LIMA1-214ENST00000552783 TECTAO75443 2155 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 DYSFO75923 2080 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 LOC102723996A0A087X1L8 192 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 C12orf77C9JDV5 145 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 AGFG2O95081 481 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SSTR5P35346 364 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 RELBQ01201 579 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 AESQ08117 197 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 FOXE3Q13461 319 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TBC1D28Q2M2D7 210 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MRPL54Q6P161 138 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MDP1Q86V88 176 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 NHLRC2Q8NBF2 726 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TXN2Q99757 166 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MS4A5Q9H3V2 200 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms