RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 BABAM2Q9NXR7 383 aa10.29□□□□□ -0.76
VPS29-209ENST00000551655 MGAT4AQ9UM21 535 aa10.29□□□□□ -0.76
VPS29-209ENST00000551655 IGHV7-4-1A0A0J9YVY3 117 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 TMEM14DPA8MWL7 114 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 K7EMT4 169 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 FABP7O15540 132 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 TMEM50BP56557 158 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 QRFPP83859 136 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 INSL4Q14641 139 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 SMN1Q16637 294 aaKnown RBP10.28□□□□□ -0.76
VPS29-209ENST00000551655 Q5VSD8 79 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 FAM90A2PQ658T7 463 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 STHQ8IWL8 128 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 PUSL1Q8N0Z8 303 aaKnown RBP10.28□□□□□ -0.76
VPS29-209ENST00000551655 C6orf223Q8N319 242 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 OR4A4PQ8NGN8 299 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 OR10J5Q8NHC4 309 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 ARHGAP5-AS1Q96IT6 56 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 CMSS1Q9BQ75 279 aaKnown RBP10.28□□□□□ -0.76
VPS29-209ENST00000551655 CLEC2DQ9UHP7 191 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 TBC1D24Q9ULP9 559 aa10.28□□□□□ -0.76
VPS29-209ENST00000551655 TRBV6-7A0A0A0MS04 114 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 FOXI3A8MTJ6 420 aaPredicted RBP10.27□□□□□ -0.77
VPS29-209ENST00000551655 F8W735 103 aaPredicted RBP10.27□□□□□ -0.77
VPS29-209ENST00000551655 UBBP0CG47 229 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 SERPINB10P48595 397 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 ARFRP1Q13795 201 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 IRF3Q14653 427 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 RNF212Q495C1 297 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 TMPRSS11AQ6ZMR5 421 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 TRPT1Q86TN4 253 aaKnown RBP10.27□□□□□ -0.77
VPS29-209ENST00000551655 TMEM116Q8NCL8 245 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 APH1BQ8WW43 257 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 CABLES2Q9BTV7 478 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 FGF20Q9NP95 211 aaPredicted RBP10.27□□□□□ -0.77
VPS29-209ENST00000551655 MRPS18AQ9NVS2 196 aaKnown RBP10.27□□□□□ -0.77
VPS29-209ENST00000551655 AP4S1Q9Y587 144 aa10.27□□□□□ -0.77
VPS29-209ENST00000551655 IGLC7A0M8Q6 106 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 KNCNA6PVL3 124 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 EI24O14681 340 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 ALPLP05186 524 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 GYS2P54840 703 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 PLA2G7Q13093 441 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 KCTD9Q7L273 389 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 TCF24Q7RTU0 167 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 UBAC2Q8NBM4 344 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 CSNK1G2-AS1Q8NCQ2 148 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 RHOXF1Q8NHV9 184 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 BSCL2Q96G97 398 aaPredicted RBP10.26□□□□□ -0.77
VPS29-209ENST00000551655 PECRQ9BY49 303 aa10.26□□□□□ -0.77
VPS29-209ENST00000551655 C15orf62A8K5M9 175 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 CELP19835 753 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 NPY1RP25929 384 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 MAS1LP35410 378 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 GNGT1P63211 74 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 PLAC9Q5JTB6 97 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 C1orf100Q5SVJ3 147 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 MORN3Q6PF18 240 aaPredicted RBP10.25□□□□□ -0.77
VPS29-209ENST00000551655 LILRB2Q8N423 598 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 TMEM14BQ9NUH8 114 aa10.25□□□□□ -0.77
VPS29-209ENST00000551655 IGHV3-66A0A0C4DH42 116 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 NBDYA0A0U1RRE5 68 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 GYG2O15488 501 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 NUPL2O15504 423 aaKnown RBP10.24□□□□□ -0.77
VPS29-209ENST00000551655 HTN3P15516 51 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 HLA-GP17693 338 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 EMP1P54849 157 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 BRWD1-AS2P59051 145 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 OR2B8PP59922 312 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 RPL8P62917 257 aaKnown RBP10.24□□□□□ -0.77
VPS29-209ENST00000551655 P2RY14Q15391 338 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 LIPKQ5VXJ0 399 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 LRRTM1Q86UE6 522 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 OR10W1Q8NGF6 305 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 VSTM2AQ8TAG5 236 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 VN1R17PQ8TDU5 208 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 CENPNQ96H22 339 aaPredicted RBP10.24□□□□□ -0.77
VPS29-209ENST00000551655 Q96MT0 163 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 CMTM3Q96MX0 182 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 GPHA2Q96T91 129 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 YTHDF1Q9BYJ9 559 aaKnown RBP10.24□□□□□ -0.77
VPS29-209ENST00000551655 MS4A6AQ9H2W1 248 aa10.24□□□□□ -0.77
VPS29-209ENST00000551655 TRAV3A0A0B4J244 114 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 YIF1AO95070 293 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 APOHP02749 345 aaPredicted RBP10.23□□□□□ -0.77
VPS29-209ENST00000551655 FCGR3AP08637 254 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 H1FOOQ8IZA3 346 aaPredicted RBP10.23□□□□□ -0.77
VPS29-209ENST00000551655 FAM89BQ8N5H3 189 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 GINS4Q9BRT9 223 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 MDFICQ9P1T7 246 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 HSF4Q9ULV5 492 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 MRPS7Q9Y2R9 242 aaKnown RBP10.23□□□□□ -0.77
VPS29-209ENST00000551655 ORC6Q9Y5N6 252 aa10.23□□□□□ -0.77
VPS29-209ENST00000551655 DNASE2O00115 360 aaPredicted RBP10.22□□□□□ -0.77
VPS29-209ENST00000551655 IGLV2-14P01704 120 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 SPP1P10451 314 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 FUSP35637 526 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS29-209ENST00000551655 Q56UQ5 140 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 SLC25A24Q6NUK1 477 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 SPSB3Q6PJ21 355 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms